Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009763.1

Orthogroup ID

OG0019388

Physical Location & Seq

Genomic Coordinates Reverse (-)

10701 .. 11384

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009763.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgtcttctacgctctgccttcttctgattctgagcctgctctccgtcacaatctcgtcgccgggatcgtcgtcgatcctccgcgccgtcaacacctgcaccgccgccgtcgatttgaacgtcaccaatttcgatgcggtgctccgtgacactcccgccacctacgcactagttgaattcttcgctaactggtctccggcttgccgaaatttgaagccgcattatgaaaaggttgcgaggctgttcaatgggcctgatgctgtgtatccggggatggtattgatgacaagggttgactgtgcgtcaaaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0010959 GO:0012505 GO:0016020 GO:0016021 GO:0016491 GO:0016667 GO:0016670 GO:0016853 GO:0016860 GO:0016864 GO:0016971 GO:0016972 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0043157 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0055114 GO:0065007 GO:0097708 GO:0098588 GO:0098791 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Evr1_Alr Thioredoxin

Protein Analysis

104

Amino Acids

11.23

Weight (kDa)

7.66

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019388)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0491751
rosa_laevigata	RLG00000022802 RLG00000022815
rosa_multiflora	Rmu_sc0000424.1_g000013 Rmu_sc0009763.1_g000002
rosa_roxburghii	Rroxscaffold_6G00392700
rosa_samantha	Rh3AG299900 Rh3CG333500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	104
AccII	CGCG	1 cut(s)	84
AciI	CCGC	6 cut(s)	82, 102, 105, 137, 156, 218
AclWI	GGATC	2 cut(s)	70, 73
AcsI	RAATTY	2 cut(s)	176, 208
AgsI	TTSAA	4 cut(s)	118, 176, 214, 247
AhdI	GACNNNNNGTC	1 cut(s)	301
AhlI	ACTAGT	1 cut(s)	169
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	2 cut(s)	70, 73
AoxI	GGCC	1 cut(s)	251
ApoI	RAATTY	2 cut(s)	176, 208
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	251
AsuC2I	CCSGG	2 cut(s)	63, 270
AsuHPI	GGTGA	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	144
BccI	CCATC	1 cut(s)	268
BceAI	ACGGC	2 cut(s)	71, 92
BciVI	GTATCC	1 cut(s)	276
BcnI	CCSGG	2 cut(s)	63, 270
BcoDI	GTCTC	1 cut(s)	198
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	104
BfuI	GTATCC	1 cut(s)	276
BisI	GCNGC	2 cut(s)	105, 218
BlsI	GCNGC	2 cut(s)	106, 219
Bme1390I	CCNGG	2 cut(s)	63, 270
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	251
BmrFI	CCNGG	2 cut(s)	63, 270
BmsI	GCATC	2 cut(s)	124, 247
BpuMI	CCSGG	2 cut(s)	63, 270
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	82
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	62, 197, 269
BsmAI	GTCTC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	253
Bso31I	GGTCTC	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	65, 75
BspACI	CCGC	6 cut(s)	82, 102, 105, 137, 156, 218
BspANI	GGCC	1 cut(s)	253
BspCNI	CTCAG	1 cut(s)	24
BspFNI	CGCG	1 cut(s)	84
BspMI	ACCTGC	1 cut(s)	104
BspPI	GGATC	2 cut(s)	70, 73
BspTNI	GGTCTC	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	2 cut(s)	65, 75
Bst4CI	ACNGT	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	38, 202
BstDEI	CTNAG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	2 cut(s)	68, 78
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	2 cut(s)	65, 75
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstSCI	CCNGG	2 cut(s)	61, 268
BstUI	CGCG	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	279
BveI	ACCTGC	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	38, 202
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	251
CseI	GACGC	1 cut(s)	291
CviJI	RGCY	5 cut(s)	36, 200, 217, 241, 253
CviKI_1	RGCY	5 cut(s)	36, 200, 217, 241, 253
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	2 cut(s)	67, 77
DpnII	GATC	2 cut(s)	65, 75
DriI	GACNNNNNGTC	1 cut(s)	301
Eam1105I	GACNNNNNGTC	1 cut(s)	301
Eco31I	GGTCTC	1 cut(s)	198
EcoRI	GAATTC	1 cut(s)	176
FaiI	YATR	2 cut(s)	225, 313
FauI	CCCGC	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	105, 218
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	105, 218
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	105, 218
HaeIII	GGCC	1 cut(s)	253
HapII	CCGG	3 cut(s)	62, 197, 269
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	2 cut(s)	91, 295
HindII	GTYRAC	2 cut(s)	91, 295
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	3 cut(s)	62, 197, 269
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	2 cut(s)	91, 295
Hpy188I	TCNGA	2 cut(s)	27, 33
Hpy8I	GTNNAC	2 cut(s)	91, 295
Hpy99I	CGWCG	4 cut(s)	61, 73, 76, 113
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	120
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	65, 75
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	7 cut(s)	50, 75, 109, 175, 210, 267, 282
LweI	GCATC	2 cut(s)	124, 247
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	3 cut(s)	46, 121, 146
MalI	GATC	2 cut(s)	67, 77
MboI	GATC	2 cut(s)	65, 75
MboII	GAAGA	2 cut(s)	14, 172
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	3 cut(s)	127, 176, 208
MnlI	CCTC	2 cut(s)	89, 231
MspI	CCGG	3 cut(s)	62, 197, 269
MspR9I	CCNGG	2 cut(s)	63, 270
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	164
NciI	CCSGG	2 cut(s)	63, 270
NdeII	GATC	2 cut(s)	65, 75
NmuCI	GTSAC	3 cut(s)	46, 121, 146
PaqCI	CACCTGC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	2 cut(s)	65, 117
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	106, 219
PspPI	GGNCC	1 cut(s)	251
SatI	GCNGC	2 cut(s)	105, 218
Sau3AI	GATC	2 cut(s)	65, 75
Sau96I	GGNCC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	63, 270
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	5 cut(s)	98, 123, 164, 234, 312
SfaNI	GCATC	2 cut(s)	124, 247
SpeI	ACTAGT	1 cut(s)	169
Sse9I	AATT	3 cut(s)	127, 176, 208
SsiI	CCGC	6 cut(s)	82, 102, 105, 137, 156, 218
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	61, 268
TaaI	ACNGT	1 cut(s)	299
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	3 cut(s)	74, 111, 132
TasI	AATT	3 cut(s)	127, 176, 208
TauI	GCSGC	2 cut(s)	107, 220
TfiI	GAWTC	1 cut(s)	28
TseFI	GTSAC	3 cut(s)	46, 121, 146
Tsp45I	GTSAC	3 cut(s)	46, 121, 146
TspDTI	ATGAA	1 cut(s)	240
TspGWI	ACGGA	2 cut(s)	34, 134
XapI	RAATTY	2 cut(s)	176, 208
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.