Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0019388

Physical Location & Seq

Genomic Coordinates Reverse (-)

37136831 .. 37138546

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG333500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTCTTCTACGCTCTGCCTTCTTCTGATTCTGAGCCTGCTCTCCGTCACAATCTCGTCGCCGGAATCGCCGTCGATCCTCCGCGCCGTCAACACTTGCACCGCCGCCGTCGATTTGAACGTCACCAATATCGATGCGGTGCTCCGTGACACTCCCGCCATCTACGCACTAGTTGAATTCTTCGCTAACTGGTGTCCGGCTTGCCGAAATTTTAAGCCGCATTATGAAAAGGTTGCGAGGCTGTTCAATGGGCCTGATGCTGTGTATCCGGGGATGGTATTGATGACAAGGGTTGACTGTGCGTCAAATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0010959 GO:0012505 GO:0016020 GO:0016021 GO:0016491 GO:0016667 GO:0016670 GO:0016853 GO:0016860 GO:0016864 GO:0016971 GO:0016972 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0043157 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0055114 GO:0065007 GO:0097708 GO:0098588 GO:0098791 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Evr1_Alr Thioredoxin

Protein Analysis

104

Amino Acids

11.32

Weight (kDa)

5.61

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	40 - 103	7.4e-09	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019388)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0491751
rosa_laevigata	RLG00000022802 RLG00000022815
rosa_multiflora	Rmu_sc0000424.1_g000013 Rmu_sc0009763.1_g000002
rosa_roxburghii	Rroxscaffold_6G00392700
rosa_samantha	Rh3AG299900 Rh3CG333500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	84
AciI	CCGC	6 cut(s)	82, 102, 105, 137, 156, 218
AclWI	GGATC	1 cut(s)	70
AcsI	RAATTY	2 cut(s)	176, 208
AgsI	TTSAA	3 cut(s)	118, 176, 247
AhdI	GACNNNNNGTC	1 cut(s)	301
AhlI	ACTAGT	1 cut(s)	169
Alw21I	GWGCWC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	70
AoxI	GGCC	1 cut(s)	251
ApoI	RAATTY	2 cut(s)	176, 208
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	251
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	144
BccI	CCATC	2 cut(s)	167, 268
BceAI	ACGGC	3 cut(s)	55, 71, 92
BciVI	GTATCC	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	270
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	276
BisI	GCNGC	2 cut(s)	105, 218
BlsI	GCNGC	2 cut(s)	106, 219
Bme1390I	CCNGG	1 cut(s)	270
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	124, 247
BpuMI	CCSGG	1 cut(s)	270
Bsa29I	ATCGAT	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	194
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	253
BshVI	ATCGAT	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	62, 197, 269
BsnI	GGCC	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	6 cut(s)	82, 102, 105, 137, 156, 218
BspANI	GGCC	1 cut(s)	253
BspCNI	CTCAG	1 cut(s)	24
BspDI	ATCGAT	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	84
BspPI	GGATC	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	38, 202
BstDEI	CTNAG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 164
BstSCI	CCNGG	1 cut(s)	268
BstUI	CGCG	1 cut(s)	84
Bsu15I	ATCGAT	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	253
BsuTUI	ATCGAT	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	38, 202
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	251
ClaI	ATCGAT	1 cut(s)	132
CseI	GACGC	1 cut(s)	291
CviJI	RGCY	5 cut(s)	36, 200, 217, 241, 253
CviKI_1	RGCY	5 cut(s)	36, 200, 217, 241, 253
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
DriI	GACNNNNNGTC	1 cut(s)	301
Eam1105I	GACNNNNNGTC	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	176
FaiI	YATR	2 cut(s)	225, 313
FauI	CCCGC	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	105, 218
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	105, 218
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	105, 218
HaeIII	GGCC	1 cut(s)	253
HapII	CCGG	3 cut(s)	62, 197, 269
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	2 cut(s)	91, 295
HindII	GTYRAC	2 cut(s)	91, 295
HinfI	GANTC	2 cut(s)	28, 65
HpaII	CCGG	3 cut(s)	62, 197, 269
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	2 cut(s)	91, 295
Hpy188I	TCNGA	2 cut(s)	27, 33
Hpy8I	GTNNAC	2 cut(s)	91, 295
Hpy99I	CGWCG	3 cut(s)	61, 76, 113
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 164
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	120
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	6 cut(s)	50, 75, 175, 210, 267, 282
LweI	GCATC	2 cut(s)	124, 247
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	3 cut(s)	46, 121, 146
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	2 cut(s)	14, 172
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	2 cut(s)	176, 208
MnlI	CCTC	2 cut(s)	89, 231
MseI	TTAA	1 cut(s)	213
MspI	CCGG	3 cut(s)	62, 197, 269
MspR9I	CCNGG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	67, 164
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	75
NmuCI	GTSAC	3 cut(s)	46, 121, 146
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	28, 65
PkrI	GCNGC	2 cut(s)	106, 219
PspPI	GGNCC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	105, 218
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	2 cut(s)	123, 234
SfaNI	GCATC	2 cut(s)	124, 247
SpeI	ACTAGT	1 cut(s)	169
Sse9I	AATT	2 cut(s)	176, 208
SsiI	CCGC	6 cut(s)	82, 102, 105, 137, 156, 218
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	299
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	3 cut(s)	74, 111, 132
TasI	AATT	2 cut(s)	176, 208
TauI	GCSGC	2 cut(s)	107, 220
TfiI	GAWTC	2 cut(s)	28, 65
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseFI	GTSAC	3 cut(s)	46, 121, 146
Tsp45I	GTSAC	3 cut(s)	46, 121, 146
TspDTI	ATGAA	1 cut(s)	240
TspGWI	ACGGA	2 cut(s)	34, 134
XapI	RAATTY	2 cut(s)	176, 208
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.