Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0019388

Physical Location & Seq

Genomic Coordinates Forward (+)

12449460 .. 12454987

Gene Structure 5528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022802

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCTTGACCAGTGCCAGAGAGCTCTTGAATCACTAGGTACTACCGTCGGCGATGGTGTCGATGACCTTTGCAACCAAAACAAACAAAAGCCCTTTCCCGTCGACCGAAAGTCGTTACGGCAATTCTCCGGTTTCCACAAAAAAAAAAAAAGCCCACCTTTATTCCAATTACCTCAAAAATCCAATTTCACGTCTTCTACGCTCTGTCTTCTTCTGATTCTGAGCCTGCTCACCGTCACAATCTCGTCGCCGGGATCGCCGTCGATCCTCCGCGCCGTCAACACCGGCACCGCCGCCGTCGATTTGAACGTCACTAATTTCGATGCGGTGCTCCGTGACACTGCCGCCACCTACGCACTAGTTGAATTCTTCGCTCACTGGTGTCTGGCTTGCCGAAATTTTAAGCCGCATTATGAAAAGGTTGCGAGGCTGTTCAATGGGCCTGATGCTGTGTATCCGGGGATGGTATTGATGACAAGGGTTGACTGTGCGTCGAAGCTGACCTGCTGCTTTAGTTGGATCAACAAGCAAATGGGCAGCTCATTTGGATTGGAGGATCGAATATCTCGTAATGTGGCACAAGCACTGTCATCTCAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0010959 GO:0012505 GO:0016020 GO:0016021 GO:0016491 GO:0016667 GO:0016670 GO:0016853 GO:0016860 GO:0016864 GO:0016971 GO:0016972 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0043157 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0055114 GO:0065007 GO:0097708 GO:0098588 GO:0098791 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Evr1_Alr Thioredoxin

Protein Analysis

201

Amino Acids

22.09

Weight (kDa)

9.19

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	101 - 169	2.5e-09	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019388)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0491751
rosa_laevigata	RLG00000022802 RLG00000022815
rosa_multiflora	Rmu_sc0000424.1_g000013 Rmu_sc0009763.1_g000002
rosa_roxburghii	Rroxscaffold_6G00392700
rosa_samantha	Rh3AG299900 Rh3CG333500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	512
AccB1I	GGYRCC	1 cut(s)	287
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	1 cut(s)	273
AciI	CCGC	6 cut(s)	271, 291, 294, 326, 345, 407
AclWI	GGATC	4 cut(s)	259, 262, 527, 564
AcsI	RAATTY	2 cut(s)	365, 397
AfaI	GTAC	1 cut(s)	40
AgsI	TTSAA	4 cut(s)	29, 307, 365, 436
AhdI	GACNNNNNGTC	2 cut(s)	109, 490
AhlI	ACTAGT	1 cut(s)	358
AjiI	CACGTC	1 cut(s)	192
AluBI	AGCT	3 cut(s)	23, 499, 540
AluI	AGCT	3 cut(s)	23, 499, 540
Alw21I	GWGCWC	2 cut(s)	25, 333
AlwI	GGATC	4 cut(s)	259, 262, 527, 564
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	2 cut(s)	507, 537
ApoI	RAATTY	2 cut(s)	365, 397
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	440
AsuC2I	CCSGG	2 cut(s)	252, 459
AsuHPI	GGTGA	1 cut(s)	223
BaeI	ACNNNNGTAYC	2 cut(s)	30, 63
BanI	GGYRCC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	25
BbsI	GAAGAC	2 cut(s)	186, 200
Bbv12I	GWGCWC	2 cut(s)	25, 333
BbvI	GCAGC	2 cut(s)	494, 549
BccI	CCATC	2 cut(s)	47, 457
BceAI	ACGGC	4 cut(s)	134, 244, 260, 281
BciVI	GTATCC	1 cut(s)	465
BcnI	CCSGG	2 cut(s)	252, 459
BcuI	ACTAGT	1 cut(s)	358
BfaI	CTAG	2 cut(s)	35, 359
BfuAI	ACCTGC	1 cut(s)	512
BfuI	GTATCC	1 cut(s)	465
BisI	GCNGC	5 cut(s)	294, 345, 407, 508, 538
BlsI	GCNGC	5 cut(s)	295, 346, 408, 509, 539
Bme1390I	CCNGG	2 cut(s)	252, 459
BmeRI	GACNNNNNGTC	2 cut(s)	109, 490
BmgBI	CACGTC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	2 cut(s)	252, 459
BmsI	GCATC	2 cut(s)	313, 436
BpiI	GAAGAC	2 cut(s)	186, 200
BpuMI	CCSGG	2 cut(s)	252, 459
BsaJI	CCNNGG	1 cut(s)	458
BsaWI	WCCGGW	1 cut(s)	128
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	2 cut(s)	10, 383
BseDI	CCNNGG	1 cut(s)	458
BseGI	GGATG	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	2 cut(s)	10, 383
BseXI	GCAGC	2 cut(s)	494, 549
Bsh1236I	CGCG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	442
BshNI	GGYRCC	1 cut(s)	287
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	2 cut(s)	25, 333
BsiSI	CCGG	4 cut(s)	129, 251, 285, 458
BsnI	GGCC	1 cut(s)	442
Bsp1286I	GDGCHC	2 cut(s)	25, 333
Bsp143I	GATC	4 cut(s)	254, 264, 519, 556
BspACI	CCGC	6 cut(s)	271, 291, 294, 326, 345, 407
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	512
BspPI	GGATC	4 cut(s)	259, 262, 527, 564
BspT107I	GGYRCC	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	10, 383
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	4 cut(s)	254, 264, 519, 556
Bst4CI	ACNGT	4 cut(s)	46, 235, 488, 588
BstC8I	GCNNGC	2 cut(s)	227, 391
BstDEI	CTNAG	2 cut(s)	221, 594
BstF5I	GGATG	1 cut(s)	468
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	4 cut(s)	257, 267, 522, 559
BstMBI	GATC	4 cut(s)	254, 264, 519, 556
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 353
BstSCI	CCNGG	2 cut(s)	250, 457
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	494, 549
BstV2I	GAAGAC	2 cut(s)	186, 200
BsuI	GTATCC	1 cut(s)	465
BsuRI	GGCC	1 cut(s)	442
BtgZI	GCGATG	1 cut(s)	66
BtrI	CACGTC	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	468
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	4 cut(s)	17, 339, 376, 584
BveI	ACCTGC	1 cut(s)	512
Cac8I	GCNNGC	2 cut(s)	227, 391
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	440
CseI	GACGC	1 cut(s)	480
Csp6I	GTAC	1 cut(s)	39
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	2 cut(s)	221, 594
DpnI	GATC	4 cut(s)	256, 266, 521, 558
DpnII	GATC	4 cut(s)	254, 264, 519, 556
DriI	GACNNNNNGTC	2 cut(s)	109, 490
Eam1105I	GACNNNNNGTC	2 cut(s)	109, 490
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	365
EcoT38I	GRGCYC	1 cut(s)	25
FaiI	YATR	1 cut(s)	414
FalI	AAGNNNNNCTT	2 cut(s)	142, 174
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	5 cut(s)	294, 345, 407, 508, 538
FokI	GGATG	1 cut(s)	475
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	5 cut(s)	294, 345, 407, 508, 538
FspBI	CTAG	2 cut(s)	35, 359
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	5 cut(s)	294, 345, 407, 508, 538
HaeIII	GGCC	1 cut(s)	442
HapII	CCGG	4 cut(s)	129, 251, 285, 458
HgaI	GACGC	1 cut(s)	480
HhaI	GCGC	1 cut(s)	275
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HincII	GTYRAC	3 cut(s)	103, 280, 484
HindII	GTYRAC	3 cut(s)	103, 280, 484
HinfI	GANTC	2 cut(s)	29, 217
HpaII	CCGG	4 cut(s)	129, 251, 285, 458
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	3 cut(s)	103, 280, 484
Hpy188I	TCNGA	3 cut(s)	216, 222, 597
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	3 cut(s)	103, 280, 484
Hpy99I	CGWCG	6 cut(s)	50, 104, 250, 265, 302, 496
HpyCH4III	ACNGT	4 cut(s)	46, 235, 488, 588
HpyCH4IV	ACGT	2 cut(s)	191, 309
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 353
HpyF3I	CTNAG	2 cut(s)	221, 594
HpySE526I	ACGT	2 cut(s)	191, 309
HspAI	GCGC	1 cut(s)	273
Kzo9I	GATC	4 cut(s)	254, 264, 519, 556
LmnI	GCTCC	1 cut(s)	336
Lsp1109I	GCAGC	2 cut(s)	494, 549
LweI	GCATC	2 cut(s)	313, 436
MaeI	CTAG	2 cut(s)	35, 359
MaeII	ACGT	2 cut(s)	191, 309
MaeIII	GTNAC	4 cut(s)	114, 235, 310, 335
MalI	GATC	4 cut(s)	256, 266, 521, 558
MboI	GATC	4 cut(s)	254, 264, 519, 556
MboII	GAAGA	4 cut(s)	186, 200, 203, 361
MhlI	GDGCHC	2 cut(s)	25, 333
MluCI	AATT	6 cut(s)	122, 167, 184, 316, 365, 397
MmeI	TCCRAC	1 cut(s)	497
MnlI	CCTC	4 cut(s)	183, 278, 420, 547
MseI	TTAA	1 cut(s)	402
MspI	CCGG	4 cut(s)	129, 251, 285, 458
MspR9I	CCNGG	2 cut(s)	252, 459
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	256, 353
NciI	CCSGG	2 cut(s)	252, 459
NdeII	GATC	4 cut(s)	254, 264, 519, 556
NlaIV	GGNNCC	1 cut(s)	289
NmuCI	GTSAC	3 cut(s)	235, 310, 335
PcsI	WCGNNNNNNNCGW	2 cut(s)	306, 565
PfeI	GAWTC	2 cut(s)	29, 217
PkrI	GCNGC	5 cut(s)	295, 346, 408, 509, 539
Psp124BI	GAGCTC	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	440
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
SacI	GAGCTC	1 cut(s)	25
SalI	GTCGAC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	5 cut(s)	294, 345, 407, 508, 538
Sau3AI	GATC	4 cut(s)	254, 264, 519, 556
Sau96I	GGNCC	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	252, 459
SduI	GDGCHC	2 cut(s)	25, 333
SfaNI	GCATC	2 cut(s)	313, 436
SpeI	ACTAGT	1 cut(s)	358
Sse9I	AATT	6 cut(s)	122, 167, 184, 316, 365, 397
SsiI	CCGC	6 cut(s)	271, 291, 294, 326, 345, 407
SspMI	CTAG	2 cut(s)	35, 359
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	250, 457
TaaI	ACNGT	4 cut(s)	46, 235, 488, 588
TaiI	ACGT	2 cut(s)	194, 312
TaqI	TCGA	7 cut(s)	60, 102, 263, 300, 321, 494, 559
TaqII	GACCGA	1 cut(s)	120
TasI	AATT	6 cut(s)	122, 167, 184, 316, 365, 397
TauI	GCSGC	3 cut(s)	296, 347, 409
TfiI	GAWTC	2 cut(s)	29, 217
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	4 cut(s)	17, 346, 383, 591
TseFI	GTSAC	3 cut(s)	235, 310, 335
TseI	GCWGC	2 cut(s)	507, 537
Tsp45I	GTSAC	3 cut(s)	235, 310, 335
TspDTI	ATGAA	1 cut(s)	429
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	4 cut(s)	17, 346, 383, 591
XapI	RAATTY	2 cut(s)	365, 397
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	2 cut(s)	35, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.