Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0492551 |
| rosa_laevigata | RLG00000018912 |
| rosa_multiflora | Rmu_sc0001630.1_g000021 Rmu_sc0010306.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00066930 |
| rosa_samantha | Rh1AG038400 Rh3BG261800 Rh4DG130300 Rh7DG339800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 238 |
| AccB1I | GGYRCC | 1 cut(s) | 267 |
| AciI | CCGC | 2 cut(s) | 122, 274 |
| AcsI | RAATTY | 2 cut(s) | 134, 202 |
| AcuI | CTGAAG | 1 cut(s) | 267 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 27 |
| AgsI | TTSAA | 1 cut(s) | 156 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 68, 100 |
| AluBI | AGCT | 1 cut(s) | 261 |
| AluI | AGCT | 1 cut(s) | 261 |
| Alw26I | GTCTC | 1 cut(s) | 224 |
| AoxI | GGCC | 1 cut(s) | 18 |
| ApoI | RAATTY | 2 cut(s) | 134, 202 |
| AseI | ATTAAT | 1 cut(s) | 116 |
| BanI | GGYRCC | 1 cut(s) | 267 |
| BccI | CCATC | 1 cut(s) | 61 |
| BclI | TGATCA | 1 cut(s) | 12 |
| BcoDI | GTCTC | 1 cut(s) | 224 |
| BmiI | GGNNCC | 1 cut(s) | 269 |
| BsaI | GGTCTC | 1 cut(s) | 224 |
| BsaWI | WCCGGW | 1 cut(s) | 264 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 221, 251 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 27 |
| Bse118I | RCCGGY | 1 cut(s) | 270 |
| BseGI | GGATG | 3 cut(s) | 43, 72, 100 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 27 |
| BshFI | GGCC | 1 cut(s) | 20 |
| BshNI | GGYRCC | 1 cut(s) | 267 |
| BsiSI | CCGG | 2 cut(s) | 265, 271 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 27 |
| BsmAI | GTCTC | 1 cut(s) | 224 |
| BsmI | GAATGC | 1 cut(s) | 115 |
| BsnI | GGCC | 1 cut(s) | 20 |
| Bso31I | GGTCTC | 1 cut(s) | 224 |
| Bsp143I | GATC | 2 cut(s) | 12, 78 |
| BspACI | CCGC | 2 cut(s) | 122, 274 |
| BspANI | GGCC | 1 cut(s) | 20 |
| BspLI | GGNNCC | 1 cut(s) | 269 |
| BspT107I | GGYRCC | 1 cut(s) | 267 |
| BspTNI | GGTCTC | 1 cut(s) | 224 |
| BsrFI | RCCGGY | 1 cut(s) | 270 |
| BssAI | RCCGGY | 1 cut(s) | 270 |
| BssMI | GATC | 2 cut(s) | 12, 78 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 119 |
| BstC8I | GCNNGC | 1 cut(s) | 272 |
| BstF5I | GGATG | 3 cut(s) | 43, 72, 100 |
| BstKTI | GATC | 2 cut(s) | 15, 81 |
| BstMAI | GTCTC | 1 cut(s) | 224 |
| BstMBI | GATC | 2 cut(s) | 12, 78 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 119, 267 |
| BsuRI | GGCC | 1 cut(s) | 20 |
| BtsCI | GGATG | 3 cut(s) | 43, 72, 100 |
| Cac8I | GCNNGC | 1 cut(s) | 272 |
| Cfr10I | RCCGGY | 1 cut(s) | 270 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4, 39 |
| CviAII | CATG | 1 cut(s) | 62 |
| CviJI | RGCY | 5 cut(s) | 20, 31, 89, 217, 261 |
| CviKI_1 | RGCY | 5 cut(s) | 20, 31, 89, 217, 261 |
| DpnI | GATC | 2 cut(s) | 14, 80 |
| DpnII | GATC | 2 cut(s) | 12, 78 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 238 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 238 |
| Eco147I | AGGCCT | 1 cut(s) | 20 |
| Eco31I | GGTCTC | 1 cut(s) | 224 |
| Eco57I | CTGAAG | 1 cut(s) | 267 |
| EcoT22I | ATGCAT | 1 cut(s) | 115 |
| FaeI | CATG | 1 cut(s) | 65 |
| FaiI | YATR | 4 cut(s) | 63, 102, 129, 176 |
| FatI | CATG | 1 cut(s) | 61 |
| FbaI | TGATCA | 1 cut(s) | 12 |
| FokI | GGATG | 3 cut(s) | 50, 79, 107 |
| HaeIII | GGCC | 1 cut(s) | 20 |
| HapII | CCGG | 2 cut(s) | 265, 271 |
| Hin1II | CATG | 1 cut(s) | 65 |
| HincII | GTYRAC | 1 cut(s) | 243 |
| HindII | GTYRAC | 1 cut(s) | 243 |
| HinfI | GANTC | 1 cut(s) | 152 |
| HpaII | CCGG | 2 cut(s) | 265, 271 |
| Hpy166II | GTNNAC | 1 cut(s) | 243 |
| Hpy8I | GTNNAC | 1 cut(s) | 243 |
| HpyCH4V | TGCA | 1 cut(s) | 113 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 119, 267 |
| Hsp92II | CATG | 1 cut(s) | 65 |
| KroI | GCCGGC | 1 cut(s) | 270 |
| KroNI | GCCGGC | 1 cut(s) | 272 |
| Ksp22I | TGATCA | 1 cut(s) | 12 |
| Kzo9I | GATC | 2 cut(s) | 12, 78 |
| LpnPI | CCDG | 2 cut(s) | 34, 38 |
| MalI | GATC | 2 cut(s) | 14, 80 |
| MboI | GATC | 2 cut(s) | 12, 78 |
| MboII | GAAGA | 1 cut(s) | 88 |
| MluCI | AATT | 5 cut(s) | 117, 134, 156, 202, 222 |
| MmeI | TCCRAC | 1 cut(s) | 127 |
| MnlI | CCTC | 1 cut(s) | 246 |
| Mph1103I | ATGCAT | 1 cut(s) | 115 |
| MroNI | GCCGGC | 1 cut(s) | 270 |
| MseI | TTAA | 2 cut(s) | 116, 159 |
| MspI | CCGG | 2 cut(s) | 265, 271 |
| Mva1269I | GAATGC | 1 cut(s) | 115 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 119, 267 |
| NaeI | GCCGGC | 1 cut(s) | 272 |
| NdeII | GATC | 2 cut(s) | 12, 78 |
| NgoMIV | GCCGGC | 1 cut(s) | 270 |
| NlaIII | CATG | 1 cut(s) | 65 |
| NlaIV | GGNNCC | 1 cut(s) | 269 |
| NsiI | ATGCAT | 1 cut(s) | 115 |
| PceI | AGGCCT | 1 cut(s) | 20 |
| PctI | GAATGC | 1 cut(s) | 115 |
| PdiI | GCCGGC | 1 cut(s) | 272 |
| PfeI | GAWTC | 1 cut(s) | 152 |
| PflFI | GACNNNGTC | 1 cut(s) | 235 |
| PshBI | ATTAAT | 1 cut(s) | 116 |
| PspN4I | GGNNCC | 1 cut(s) | 269 |
| PsyI | GACNNNGTC | 1 cut(s) | 235 |
| SaqAI | TTAA | 2 cut(s) | 116, 159 |
| Sau3AI | GATC | 2 cut(s) | 12, 78 |
| SetI | ASST | 4 cut(s) | 165, 236, 257, 263 |
| Sse9I | AATT | 5 cut(s) | 117, 134, 156, 202, 222 |
| SseBI | AGGCCT | 1 cut(s) | 20 |
| SsiI | CCGC | 2 cut(s) | 122, 274 |
| StuI | AGGCCT | 1 cut(s) | 20 |
| TaqI | TCGA | 1 cut(s) | 257 |
| TasI | AATT | 5 cut(s) | 117, 134, 156, 202, 222 |
| TfiI | GAWTC | 1 cut(s) | 152 |
| Tru1I | TTAA | 2 cut(s) | 116, 159 |
| Tru9I | TTAA | 2 cut(s) | 116, 159 |
| TspDTI | ATGAA | 1 cut(s) | 50 |
| Tth111I | GACNNNGTC | 1 cut(s) | 235 |
| VspI | ATTAAT | 1 cut(s) | 116 |
| XapI | RAATTY | 2 cut(s) | 134, 202 |
| Zsp2I | ATGCAT | 1 cut(s) | 115 |