Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010306.1

Orthogroup ID

OG0018991

Physical Location & Seq

Genomic Coordinates Reverse (-)

6620 .. 6904

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010306.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atgggtttggttttggatgtgtatgtggggaatgcattaattgcgatgtatgagaaatttgggtttgttggagattcagttaaggtgtttgagaagatgagcgagaggaacttggtgtcttggaattcgatgattgggctgtcaattctggagcaaagtggggtcgaccttccggtgccggcggaggtgatgataagtgcagcggtgacggagactgagacagtgatggggatgacgcggtggtggggggaggagaggaagatggtgatgggtttaagggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

94

Amino Acids

10.46

Weight (kDa)

4.67

Isoelectric Point (pI)

53.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018991)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0492551
rosa_laevigata	RLG00000018912
rosa_multiflora	Rmu_sc0001630.1_g000021 Rmu_sc0010306.1_g000003
rosa_roxburghii	Rroxscaffold_1G00066930
rosa_samantha	Rh1AG038400 Rh3BG261800 Rh4DG130300 Rh7DG339800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	238
AciI	CCGC	3 cut(s)	182, 203, 238
AcsI	RAATTY	2 cut(s)	56, 124
Alw26I	GTCTC	2 cut(s)	206, 212
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	2 cut(s)	56, 124
AseI	ATTAAT	1 cut(s)	38
AsuHPI	GGTGA	3 cut(s)	199, 217, 277
BanI	GGYRCC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	3 cut(s)	220, 256, 262
BcoDI	GTCTC	2 cut(s)	206, 212
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bse118I	RCCGGY	1 cut(s)	178
BseGI	GGATG	2 cut(s)	22, 237
BseMII	CTCAG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	212
BsgI	GTGCAG	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	238
BshNI	GGYRCC	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	173, 179
BsmAI	GTCTC	2 cut(s)	206, 212
BsmI	GAATGC	1 cut(s)	37
BspACI	CCGC	3 cut(s)	182, 203, 238
BspCNI	CTCAG	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	177
BspT107I	GGYRCC	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	223
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	22, 237
BstFNI	CGCG	1 cut(s)	238
BstMAI	GTCTC	2 cut(s)	206, 212
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	212
BtgZI	GCGATG	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	22, 237
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	178
CseI	GACGC	1 cut(s)	244
CviJI	RGCY	1 cut(s)	139
CviKI_1	RGCY	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	216
EciI	GGCGGA	1 cut(s)	197
EcoRI	GAATTC	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	37
FaiI	YATR	2 cut(s)	24, 51
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	2 cut(s)	29, 244
Fsp4HI	GCNGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	170
HapII	CCGG	2 cut(s)	173, 179
HgaI	GACGC	1 cut(s)	244
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	2 cut(s)	173, 179
HphI	GGTGA	3 cut(s)	199, 217, 277
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	2 cut(s)	35, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	216
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	3 cut(s)	134, 186, 192
Lsp1109I	GCAGC	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	205
MboII	GAAGA	2 cut(s)	106, 271
MluCI	AATT	4 cut(s)	39, 56, 124, 144
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	4 cut(s)	99, 178, 244, 249
Mph1103I	ATGCAT	1 cut(s)	37
MroNI	GCCGGC	1 cut(s)	178
MseI	TTAA	3 cut(s)	38, 81, 275
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	2 cut(s)	173, 179
Mva1269I	GAATGC	1 cut(s)	37
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	41
NaeI	GCCGGC	1 cut(s)	180
NgoMIV	GCCGGC	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	37
PctI	GAATGC	1 cut(s)	37
PdiI	GCCGGC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	202
PshBI	ATTAAT	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	177
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	3 cut(s)	38, 81, 275
SatI	GCNGC	1 cut(s)	201
SetI	ASST	3 cut(s)	87, 171, 189
SgeI	CNNG	7 cut(s)	115, 124, 132, 161, 185, 191, 249
Sse9I	AATT	4 cut(s)	39, 56, 124, 144
SsiI	CCGC	3 cut(s)	182, 203, 238
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	2 cut(s)	128, 165
TasI	AATT	4 cut(s)	39, 56, 124, 144
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	3 cut(s)	38, 81, 275
Tru9I	TTAA	3 cut(s)	38, 81, 275
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	205
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	228
VspI	ATTAAT	1 cut(s)	38
XapI	RAATTY	2 cut(s)	56, 124
XmiI	GTMKAC	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.