Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018991

Physical Location & Seq

Genomic Coordinates Reverse (-)

88373323 .. 88374589

Gene Structure 1267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00066930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCGGTGGTGGTGGCGGCGGCGGCCTCACGTATTCTGTTGTTGTTGTCCGTAAGAATCCATGGTCTCGAATTGCAGCACCGAAGACATAGGATGAGTCAACGAAGGAGATATGATCGATCTTGGAGAAGTCCACCGAGAATCTATTTGAAGCACCGAAGGCTCAATCACCTAAGTCGTTCGCCCCAATCTCGATCAAATCCAAAACCCGATTCTGGTCCGCCGCACTGTAAATCTCGCTGTCCCATAAAACTCCTCACTACTTTGGGCTCCTCACACAACAACACAACATCCAGTTTAATCCCACTGTATGTGGGCAATGCATTAATTGCGGTGTATGAGAAATTTGGGTTTGTTGGAGATTCGGTTAAGGTGTTTGAGAAGATAAGTGAGAGGAACTTGGTGTCTTGGAATTCGATGATTGGGGTGTCAATTCGGAAGCCACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

149

Amino Acids

17.02

Weight (kDa)

11.59

Isoelectric Point (pI)

67.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018991)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0492551
rosa_laevigata	RLG00000018912
rosa_multiflora	Rmu_sc0001630.1_g000021 Rmu_sc0010306.1_g000003
rosa_roxburghii	Rroxscaffold_1G00066930
rosa_samantha	Rh1AG038400 Rh3BG261800 Rh4DG130300 Rh7DG339800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	5, 17, 20, 23, 221, 224, 332
AcsI	RAATTY	2 cut(s)	344, 412
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	151
AjuI	GAANNNNNNNTTGG	2 cut(s)	196, 228
Alw26I	GTCTC	1 cut(s)	71
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	1 cut(s)	76
ApoI	RAATTY	2 cut(s)	344, 412
AseI	ATTAAT	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	71
BisI	GCNGC	5 cut(s)	18, 21, 24, 77, 224
BlsI	GCNGC	5 cut(s)	19, 22, 25, 78, 225
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	91
Bsa29I	ATCGAT	1 cut(s)	118
BsaAI	YACGTR	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	61
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	294
Bse3DI	GCAATG	1 cut(s)	325
BseCI	ATCGAT	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	2 cut(s)	99, 290
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMI	GCAATG	1 cut(s)	325
BseNI	ACTGG	1 cut(s)	294
BseRI	GAGGAG	2 cut(s)	245, 262
BseXI	GCAGC	1 cut(s)	88
BshFI	GGCC	1 cut(s)	26
BshVI	ATCGAT	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	26
Bso31I	GGTCTC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	3 cut(s)	115, 119, 194
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	7 cut(s)	5, 17, 20, 23, 221, 224, 332
BspANI	GGCC	1 cut(s)	26
BspDI	ATCGAT	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	271
BspTNI	GGTCTC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	3 cut(s)	115, 119, 194
BssT1I	CCWWGG	1 cut(s)	61
Bst4CI	ACNGT	2 cut(s)	230, 309
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	173
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	99, 290
BstKTI	GATC	3 cut(s)	118, 122, 197
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	3 cut(s)	115, 119, 194
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 160, 329
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	26
BsuTUI	ATCGAT	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	99, 290
BtsIMutI	CAGTG	2 cut(s)	226, 305
Cfr13I	GGNCC	1 cut(s)	218
ClaI	ATCGAT	1 cut(s)	118
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	4 cut(s)	26, 163, 270, 442
CviKI_1	RGCY	4 cut(s)	26, 163, 270, 442
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	3 cut(s)	117, 121, 196
DpnII	GATC	3 cut(s)	115, 119, 194
EciI	GGCGGA	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	272
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	61
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	1 cut(s)	65
FaiI	YATR	6 cut(s)	63, 90, 114, 248, 312, 339
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	1 cut(s)	61
Fnu4HI	GCNGC	5 cut(s)	18, 21, 24, 77, 224
FokI	GGATG	2 cut(s)	106, 277
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	5 cut(s)	18, 21, 24, 77, 224
GluI	GCNGC	5 cut(s)	18, 21, 24, 77, 224
HaeIII	GGCC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	65
HincII	GTYRAC	1 cut(s)	101
HindII	GTYRAC	1 cut(s)	101
HinfI	GANTC	5 cut(s)	57, 97, 141, 212, 362
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	2 cut(s)	101, 134
Hpy188I	TCNGA	1 cut(s)	438
Hpy188III	TCNNGA	2 cut(s)	68, 192
Hpy8I	GTNNAC	2 cut(s)	101, 134
HpyAV	CCTTC	2 cut(s)	99, 153
HpyCH4III	ACNGT	2 cut(s)	230, 309
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	76, 323
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 160, 329
HpyF3I	CTNAG	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	31
Hsp92II	CATG	1 cut(s)	65
Kzo9I	GATC	3 cut(s)	115, 119, 194
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	2 cut(s)	201, 307
Lsp1109I	GCAGC	1 cut(s)	88
MaeII	ACGT	1 cut(s)	31
MalI	GATC	3 cut(s)	117, 121, 196
MboI	GATC	3 cut(s)	115, 119, 194
MboII	GAAGA	2 cut(s)	96, 394
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	5 cut(s)	71, 327, 344, 412, 432
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	4 cut(s)	37, 266, 283, 387
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	3 cut(s)	299, 326, 369
MwoI	GCNNNNNNNGC	3 cut(s)	23, 160, 329
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	3 cut(s)	115, 119, 194
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	271
NsiI	ATGCAT	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	442
PfeI	GAWTC	4 cut(s)	57, 141, 212, 362
PkrI	GCNGC	5 cut(s)	19, 22, 25, 78, 225
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
Ppu21I	YACGTR	1 cut(s)	32
PshBI	ATTAAT	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	299, 326, 369
SatI	GCNGC	5 cut(s)	18, 21, 24, 77, 224
Sau3AI	GATC	3 cut(s)	115, 119, 194
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	3 cut(s)	34, 174, 375
SinI	GGWCC	1 cut(s)	218
Sse9I	AATT	5 cut(s)	71, 327, 344, 412, 432
SsiI	CCGC	7 cut(s)	5, 17, 20, 23, 221, 224, 332
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	2 cut(s)	230, 309
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	4 cut(s)	69, 118, 193, 416
TasI	AATT	5 cut(s)	71, 327, 344, 412, 432
TauI	GCSGC	4 cut(s)	20, 23, 26, 226
TfiI	GAWTC	4 cut(s)	57, 141, 212, 362
Tru1I	TTAA	3 cut(s)	299, 326, 369
Tru9I	TTAA	3 cut(s)	299, 326, 369
TscAI	CASTG	2 cut(s)	233, 312
TseI	GCWGC	1 cut(s)	76
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	2 cut(s)	233, 312
VpaK11BI	GGWCC	1 cut(s)	218
VspI	ATTAAT	1 cut(s)	326
XapI	RAATTY	2 cut(s)	344, 412
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.