Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018991

Physical Location & Seq

Genomic Coordinates Forward (+)

42720284 .. 42723128

Gene Structure 2845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018912

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCTTGCTTGGCATCCTGCCTTGCAGTTTTCAAACTCAACATGATGGAAGCTGGGATGCTAGTTTTGGCTCTCTTCTCCCCGAAATCGGTGGCCTCCGGCAGCTGCAACCCGGTTTTCACTTTCTCACTTCACTTTTTTACAAGGGCCTATGGTGGGCTTTTGGATGTGGGTTTGGGGCAGGGGGTTCATGGGATGGTTGTGAAGATTGGGTTGGCTTTGGATGTGTATGTGGGGAATGCATTAATTGCGGTGTATGAGAAATTTGGGTTTGTTGGAGATTCAATTAAGGTGTTTGAGAATATGAGTGAGAGAAACTTGGTGTCTTGGAATTTGATGATTGGGCTGTCAATTCTGCAGACCTTGTCGTCAACCGAAGTGAGGTCGAGCTTCCGGCGCCGGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

136

Amino Acids

14.69

Weight (kDa)

9.22

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018991)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0492551
rosa_laevigata	RLG00000018912
rosa_multiflora	Rmu_sc0001630.1_g000021 Rmu_sc0010306.1_g000003
rosa_roxburghii	Rroxscaffold_1G00066930
rosa_samantha	Rh1AG038400 Rh3BG261800 Rh4DG130300 Rh7DG339800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	367
AccB1I	GGYRCC	1 cut(s)	396
AciI	CCGC	2 cut(s)	251, 403
AcsI	RAATTY	2 cut(s)	263, 331
AcyI	GRCGYC	1 cut(s)	397
AfiI	CCNNNNNNNGG	3 cut(s)	88, 156, 381
AgsI	TTSAA	2 cut(s)	34, 285
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	3 cut(s)	53, 105, 390
AluI	AGCT	3 cut(s)	53, 105, 390
AoxI	GGCC	2 cut(s)	93, 147
ApeKI	GCWGC	2 cut(s)	102, 105
ApoI	RAATTY	2 cut(s)	263, 331
AseI	ATTAAT	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	147
AsuC2I	CCSGG	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	92, 114
BccI	CCATC	2 cut(s)	40, 190
BcnI	CCSGG	1 cut(s)	113
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	356
BfoI	RGCGCY	1 cut(s)	400
BisI	GCNGC	2 cut(s)	103, 106
BlsI	GCNGC	2 cut(s)	104, 107
Bme1390I	CCNGG	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	2 cut(s)	23, 48
BpuMI	CCSGG	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 156, 381
Bse118I	RCCGGY	1 cut(s)	399
BseGI	GGATG	5 cut(s)	14, 63, 172, 201, 229
BseLI	CCNNNNNNNGG	3 cut(s)	88, 156, 381
BseXI	GCAGC	2 cut(s)	92, 114
BseYI	CCCAGC	1 cut(s)	53
BshFI	GGCC	2 cut(s)	95, 149
BshNI	GGYRCC	1 cut(s)	396
BsiSI	CCGG	4 cut(s)	99, 113, 394, 400
BslI	CCNNNNNNNGG	3 cut(s)	88, 156, 381
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	95, 149
BspACI	CCGC	2 cut(s)	251, 403
BspANI	GGCC	2 cut(s)	95, 149
BspLI	GGNNCC	1 cut(s)	398
BspMAI	CTGCAG	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	399
BssAI	RCCGGY	1 cut(s)	399
BssNI	GRCGYC	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	397
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	7, 401
BstF5I	GGATG	5 cut(s)	14, 63, 172, 201, 229
BstH2I	RGCGCY	1 cut(s)	400
BstHHI	GCGC	1 cut(s)	399
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 248, 396
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	356
BstV1I	GCAGC	2 cut(s)	92, 114
BsuRI	GGCC	2 cut(s)	95, 149
BtsCI	GGATG	5 cut(s)	14, 63, 172, 201, 229
Cac8I	GCNNGC	2 cut(s)	7, 401
CfoI	GCGC	1 cut(s)	399
Cfr10I	RCCGGY	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	147
CviAII	CATG	2 cut(s)	43, 191
DinI	GGCGCC	1 cut(s)	398
DrdI	GACNNNNNNGTC	1 cut(s)	367
DseDI	GACNNNNNNGTC	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
EcoO109I	RGGNCCY	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	244
EgeI	GGCGCC	1 cut(s)	398
EheI	GGCGCC	1 cut(s)	398
FaeI	CATG	2 cut(s)	46, 194
FaiI	YATR	6 cut(s)	44, 153, 192, 231, 258, 305
FatI	CATG	2 cut(s)	42, 190
Fnu4HI	GCNGC	2 cut(s)	103, 106
FokI	GGATG	4 cut(s)	70, 179, 208, 236
Fsp4HI	GCNGC	2 cut(s)	103, 106
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	2 cut(s)	103, 106
GsaI	CCCAGC	1 cut(s)	57
HaeII	RGCGCY	1 cut(s)	400
HaeIII	GGCC	2 cut(s)	95, 149
HapII	CCGG	4 cut(s)	99, 113, 394, 400
HhaI	GCGC	1 cut(s)	399
Hin1I	GRCGYC	1 cut(s)	397
Hin1II	CATG	2 cut(s)	46, 194
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HinfI	GANTC	1 cut(s)	281
HpaII	CCGG	4 cut(s)	99, 113, 394, 400
Hpy166II	GTNNAC	1 cut(s)	372
Hpy8I	GTNNAC	1 cut(s)	372
HpyCH4V	TGCA	4 cut(s)	26, 108, 242, 358
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 248, 396
Hsp92I	GRCGYC	1 cut(s)	397
Hsp92II	CATG	2 cut(s)	46, 194
HspAI	GCGC	1 cut(s)	397
KasI	GGCGCC	1 cut(s)	396
KroI	GCCGGC	1 cut(s)	399
KroNI	GCCGGC	1 cut(s)	401
LpnPI	CCDG	5 cut(s)	31, 39, 112, 126, 167
Lsp1109I	GCAGC	2 cut(s)	92, 114
LweI	GCATC	2 cut(s)	23, 48
MaeI	CTAG	1 cut(s)	62
MboII	GAAGA	2 cut(s)	67, 217
MluCI	AATT	5 cut(s)	246, 263, 285, 331, 351
Mly113I	GGCGCC	1 cut(s)	397
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	2 cut(s)	106, 375
Mph1103I	ATGCAT	1 cut(s)	244
MreI	CGCCGGCG	1 cut(s)	399
MroNI	GCCGGC	1 cut(s)	399
MseI	TTAA	2 cut(s)	245, 288
MspA1I	CMGCKG	1 cut(s)	105
MspI	CCGG	4 cut(s)	99, 113, 394, 400
MspR9I	CCNGG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	244
MwoI	GCNNNNNNNGC	3 cut(s)	11, 248, 396
NaeI	GCCGGC	1 cut(s)	401
NarI	GGCGCC	1 cut(s)	397
NciI	CCSGG	1 cut(s)	113
NgoMIV	GCCGGC	1 cut(s)	399
NlaIII	CATG	2 cut(s)	46, 194
NlaIV	GGNNCC	1 cut(s)	398
NsiI	ATGCAT	1 cut(s)	244
PctI	GAATGC	1 cut(s)	244
PdiI	GCCGGC	1 cut(s)	401
PfeI	GAWTC	1 cut(s)	281
PflFI	GACNNNGTC	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	104, 107
PluTI	GGCGCC	1 cut(s)	400
PshBI	ATTAAT	1 cut(s)	245
PspFI	CCCAGC	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	360
PsyI	GACNNNGTC	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	245, 288
SatI	GCNGC	2 cut(s)	103, 106
Sau96I	GGNCC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	113
SetI	ASST	6 cut(s)	55, 107, 294, 365, 386, 392
SfaNI	GCATC	2 cut(s)	23, 48
SfcI	CTRYAG	1 cut(s)	356
SfoI	GGCGCC	1 cut(s)	398
SgrAI	CRCCGGYG	1 cut(s)	399
Sse9I	AATT	5 cut(s)	246, 263, 285, 331, 351
SsiI	CCGC	2 cut(s)	251, 403
SspDI	GGCGCC	1 cut(s)	396
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	111
TaqI	TCGA	1 cut(s)	386
TasI	AATT	5 cut(s)	246, 263, 285, 331, 351
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	2 cut(s)	245, 288
Tru9I	TTAA	2 cut(s)	245, 288
TseI	GCWGC	2 cut(s)	102, 105
TspDTI	ATGAA	1 cut(s)	179
Tth111I	GACNNNGTC	1 cut(s)	364
VspI	ATTAAT	1 cut(s)	245
XapI	RAATTY	2 cut(s)	263, 331
XspI	CTAG	1 cut(s)	62
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.