Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0018991

Physical Location & Seq

Genomic Coordinates Reverse (-)

25340569 .. 25340846

Gene Structure 278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG261800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGCCTTGTGTGATCAAGGCCTGTGGTGGGCTTTTGGATGTGGGTTTGGGGCAGGGGGTTCATGGGATGGTGTTTGAGAAGATGAGTGAGAGAAACTTGGTGTCTTGGAATTCAATGATTGGGCTGTCAATTCTGGAGGCCTTGTCGTCAGCCGAAGTGAGGTCGAGCTTCAGGCGCCGGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

61

Amino Acids

6.68

Weight (kDa)

9.49

Isoelectric Point (pI)

83.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018991)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0492551
rosa_laevigata	RLG00000018912
rosa_multiflora	Rmu_sc0001630.1_g000021 Rmu_sc0010306.1_g000003
rosa_roxburghii	Rroxscaffold_1G00066930
rosa_samantha	Rh1AG038400 Rh3BG261800 Rh4DG130300 Rh7DG339800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	174
AciI	CCGC	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	154
AcyI	GRCGYC	1 cut(s)	175
AfiI	CCNNNNNNNGG	2 cut(s)	27, 159
AgsI	TTSAA	1 cut(s)	114
AluBI	AGCT	1 cut(s)	168
AluI	AGCT	1 cut(s)	168
AoxI	GGCC	2 cut(s)	18, 138
ApoI	RAATTY	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	174
BccI	CCATC	1 cut(s)	61
BclI	TGATCA	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 159
Bse118I	RCCGGY	1 cut(s)	177
BseGI	GGATG	2 cut(s)	43, 72
BseLI	CCNNNNNNNGG	2 cut(s)	27, 159
BshFI	GGCC	2 cut(s)	20, 140
BshNI	GGYRCC	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	27, 159
BsnI	GGCC	2 cut(s)	20, 140
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	2 cut(s)	20, 140
BspLI	GGNNCC	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	177
BssAI	RCCGGY	1 cut(s)	177
BssMI	GATC	1 cut(s)	12
BssNI	GRCGYC	1 cut(s)	175
BstACI	GRCGYC	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	179
BstF5I	GGATG	2 cut(s)	43, 72
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BsuRI	GGCC	2 cut(s)	20, 140
BtsCI	GGATG	2 cut(s)	43, 72
Cac8I	GCNNGC	1 cut(s)	179
CfoI	GCGC	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	177
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	6 cut(s)	20, 31, 124, 140, 152, 168
CviKI_1	RGCY	6 cut(s)	20, 31, 124, 140, 152, 168
DinI	GGCGCC	1 cut(s)	176
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eco147I	AGGCCT	2 cut(s)	20, 140
Eco57I	CTGAAG	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	109
EgeI	GGCGCC	1 cut(s)	176
EheI	GGCGCC	1 cut(s)	176
FaeI	CATG	1 cut(s)	65
FaiI	YATR	1 cut(s)	63
FatI	CATG	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	12
FokI	GGATG	2 cut(s)	50, 79
GlaI	GCGC	1 cut(s)	176
GsuI	CTGGAG	1 cut(s)	155
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	20, 140
HapII	CCGG	1 cut(s)	178
HhaI	GCGC	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	1 cut(s)	175
KasI	GGCGCC	1 cut(s)	174
KroI	GCCGGC	1 cut(s)	177
KroNI	GCCGGC	1 cut(s)	179
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	4 cut(s)	34, 38, 119, 157
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	1 cut(s)	91
MluCI	AATT	2 cut(s)	109, 129
Mly113I	GGCGCC	1 cut(s)	175
MnlI	CCTC	2 cut(s)	130, 153
MreI	CGCCGGCG	1 cut(s)	177
MroNI	GCCGGC	1 cut(s)	177
MspI	CCGG	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	174
NaeI	GCCGGC	1 cut(s)	179
NarI	GGCGCC	1 cut(s)	175
NdeII	GATC	1 cut(s)	12
NgoMIV	GCCGGC	1 cut(s)	177
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	176
PceI	AGGCCT	2 cut(s)	20, 140
PdiI	GCCGGC	1 cut(s)	179
PluTI	GGCGCC	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	176
Sau3AI	GATC	1 cut(s)	12
SetI	ASST	2 cut(s)	164, 170
SfoI	GGCGCC	1 cut(s)	176
SgrAI	CRCCGGYG	1 cut(s)	177
Sse9I	AATT	2 cut(s)	109, 129
SseBI	AGGCCT	2 cut(s)	20, 140
SsiI	CCGC	1 cut(s)	181
SspDI	GGCGCC	1 cut(s)	174
StuI	AGGCCT	2 cut(s)	20, 140
TaqI	TCGA	1 cut(s)	164
TasI	AATT	2 cut(s)	109, 129
TspDTI	ATGAA	1 cut(s)	50
XapI	RAATTY	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.