Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001630.1

Orthogroup ID

OG0018991

Physical Location & Seq

Genomic Coordinates Forward (+)

150681 .. 150959

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001630.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atgccttgtgtgatcaagacctgtggtgggcttttggatgtgggtttggggcagggggttcatgggatggttgtgaagatcgggttggctttggatgtgtatgtggggaatgcattaattgcggtgtatgagaaatttgggtttgttggagattcaattaaggtgtttgagaatatgagtgagagaaacttggtgtcttggaatttgatgattgggctgtcaattctggagaccttgtcgtcaaccaaagtgaggtcgagcttctggcgccggcggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

92

Amino Acids

10.09

Weight (kDa)

9.14

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018991)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0492551
rosa_laevigata	RLG00000018912
rosa_multiflora	Rmu_sc0001630.1_g000021 Rmu_sc0010306.1_g000003
rosa_roxburghii	Rroxscaffold_1G00066930
rosa_samantha	Rh1AG038400 Rh3BG261800 Rh4DG130300 Rh7DG339800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	238
AccB1I	GGYRCC	1 cut(s)	267
AciI	CCGC	2 cut(s)	122, 274
AcsI	RAATTY	2 cut(s)	134, 202
AcyI	GRCGYC	1 cut(s)	268
AfiI	CCNNNNNNNGG	2 cut(s)	27, 252
AgsI	TTSAA	1 cut(s)	156
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AluBI	AGCT	1 cut(s)	261
AluI	AGCT	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	224
ApoI	RAATTY	2 cut(s)	134, 202
AseI	ATTAAT	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	267
BccI	CCATC	1 cut(s)	61
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	224
BfoI	RGCGCY	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	269
BpmI	CTGGAG	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	268
BsaI	GGTCTC	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 252
Bse118I	RCCGGY	1 cut(s)	270
BseGI	GGATG	3 cut(s)	43, 72, 100
BseLI	CCNNNNNNNGG	2 cut(s)	27, 252
BshNI	GGYRCC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	271
BslI	CCNNNNNNNGG	2 cut(s)	27, 252
BsmAI	GTCTC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	115
Bso31I	GGTCTC	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	12, 78
BspACI	CCGC	2 cut(s)	122, 274
BspLI	GGNNCC	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	267
BspTNI	GGTCTC	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	270
BssAI	RCCGGY	1 cut(s)	270
BssMI	GATC	2 cut(s)	12, 78
BssNI	GRCGYC	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	268
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	272
BstF5I	GGATG	3 cut(s)	43, 72, 100
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	2 cut(s)	15, 81
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	2 cut(s)	12, 78
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 267
BtsCI	GGATG	3 cut(s)	43, 72, 100
Cac8I	GCNNGC	1 cut(s)	272
CfoI	GCGC	1 cut(s)	270
Cfr10I	RCCGGY	1 cut(s)	270
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	4 cut(s)	31, 89, 217, 261
CviKI_1	RGCY	4 cut(s)	31, 89, 217, 261
DinI	GGCGCC	1 cut(s)	269
DpnI	GATC	2 cut(s)	14, 80
DpnII	GATC	2 cut(s)	12, 78
DrdI	GACNNNNNNGTC	1 cut(s)	238
DseDI	GACNNNNNNGTC	1 cut(s)	238
Eco31I	GGTCTC	1 cut(s)	224
EcoT22I	ATGCAT	1 cut(s)	115
EgeI	GGCGCC	1 cut(s)	269
EheI	GGCGCC	1 cut(s)	269
FaeI	CATG	1 cut(s)	65
FaiI	YATR	4 cut(s)	63, 102, 129, 176
FatI	CATG	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	12
FokI	GGATG	3 cut(s)	50, 79, 107
GlaI	GCGC	1 cut(s)	269
GsuI	CTGGAG	1 cut(s)	248
HaeII	RGCGCY	1 cut(s)	271
HapII	CCGG	1 cut(s)	271
HhaI	GCGC	1 cut(s)	270
Hin1I	GRCGYC	1 cut(s)	268
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	1 cut(s)	271
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188III	TCNNGA	2 cut(s)	16, 227
Hpy8I	GTNNAC	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 267
Hsp92I	GRCGYC	1 cut(s)	268
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	1 cut(s)	268
KasI	GGCGCC	1 cut(s)	267
KroI	GCCGGC	1 cut(s)	270
KroNI	GCCGGC	1 cut(s)	272
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	12, 78
LpnPI	CCDG	4 cut(s)	34, 38, 212, 250
MalI	GATC	2 cut(s)	14, 80
MboI	GATC	2 cut(s)	12, 78
MboII	GAAGA	1 cut(s)	88
MluCI	AATT	5 cut(s)	117, 134, 156, 202, 222
Mly113I	GGCGCC	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	1 cut(s)	246
Mph1103I	ATGCAT	1 cut(s)	115
MreI	CGCCGGCG	1 cut(s)	270
MroNI	GCCGGC	1 cut(s)	270
MseI	TTAA	2 cut(s)	116, 159
MspI	CCGG	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	115
MwoI	GCNNNNNNNGC	2 cut(s)	119, 267
NaeI	GCCGGC	1 cut(s)	272
NarI	GGCGCC	1 cut(s)	268
NdeII	GATC	2 cut(s)	12, 78
NgoMIV	GCCGGC	1 cut(s)	270
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	269
NsiI	ATGCAT	1 cut(s)	115
PctI	GAATGC	1 cut(s)	115
PdiI	GCCGGC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	152
PflFI	GACNNNGTC	1 cut(s)	235
PluTI	GGCGCC	1 cut(s)	271
PshBI	ATTAAT	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	269
PsyI	GACNNNGTC	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	116, 159
Sau3AI	GATC	2 cut(s)	12, 78
SetI	ASST	5 cut(s)	23, 165, 236, 257, 263
SfoI	GGCGCC	1 cut(s)	269
SgrAI	CRCCGGYG	1 cut(s)	270
Sse9I	AATT	5 cut(s)	117, 134, 156, 202, 222
SsiI	CCGC	2 cut(s)	122, 274
SspDI	GGCGCC	1 cut(s)	267
TaqI	TCGA	1 cut(s)	257
TasI	AATT	5 cut(s)	117, 134, 156, 202, 222
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	2 cut(s)	116, 159
Tru9I	TTAA	2 cut(s)	116, 159
TspDTI	ATGAA	1 cut(s)	50
Tth111I	GACNNNGTC	1 cut(s)	235
VspI	ATTAAT	1 cut(s)	116
XapI	RAATTY	2 cut(s)	134, 202
Zsp2I	ATGCAT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.