Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0018991

Physical Location & Seq

Genomic Coordinates Reverse (-)

6675992 .. 6676270

Gene Structure 279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG038400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGCCTTGTGTGATCAAGGCCTGTGGTGGGCTTTTGGATGTGGGTTTGGGGCAGGGGGTTCATGGGATGGTTGTGAAGATCGGGTTGGCTTTGGATGTGTATGTGGAGAATGCATTAATTGCAGTGTATGAGAAATTTGGGTTTGTTGGAGATTCAATTAAGGTGTTTGAGAATATGAGTGAGAGAAACTTGGTGTCTTGGAATTTGATGATTGGGCTGTCAATTCTGGAGACCTTGTCGTCAACCGAAGTGAGGTCGAGCTTCCGGCGTCGGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

92

Amino Acids

10.11

Weight (kDa)

7.8

Isoelectric Point (pI)

53.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018991)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0492551
rosa_laevigata	RLG00000018912
rosa_multiflora	Rmu_sc0001630.1_g000021 Rmu_sc0010306.1_g000003
rosa_roxburghii	Rroxscaffold_1G00066930
rosa_samantha	Rh1AG038400 Rh3BG261800 Rh4DG130300 Rh7DG339800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	238
AciI	CCGC	1 cut(s)	274
AcsI	RAATTY	2 cut(s)	134, 202
AcyI	GRCGYC	1 cut(s)	268
AfiI	CCNNNNNNNGG	2 cut(s)	27, 252
AgsI	TTSAA	1 cut(s)	156
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AluBI	AGCT	1 cut(s)	261
AluI	AGCT	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	18
ApoI	RAATTY	2 cut(s)	134, 202
AseI	ATTAAT	1 cut(s)	116
BccI	CCATC	1 cut(s)	61
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	268
BsaI	GGTCTC	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 252
BseGI	GGATG	3 cut(s)	43, 72, 100
BseLI	CCNNNNNNNGG	2 cut(s)	27, 252
BshFI	GGCC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	265
BslI	CCNNNNNNNGG	2 cut(s)	27, 252
BsmAI	GTCTC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	20
Bso31I	GGTCTC	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	12, 78
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	224
BssMI	GATC	2 cut(s)	12, 78
BssNI	GRCGYC	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	268
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstF5I	GGATG	3 cut(s)	43, 72, 100
BstKTI	GATC	2 cut(s)	15, 81
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	2 cut(s)	12, 78
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	20
BtsCI	GGATG	3 cut(s)	43, 72, 100
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	129
CseI	GACGC	1 cut(s)	257
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	5 cut(s)	20, 31, 89, 217, 261
CviKI_1	RGCY	5 cut(s)	20, 31, 89, 217, 261
DpnI	GATC	2 cut(s)	14, 80
DpnII	GATC	2 cut(s)	12, 78
DrdI	GACNNNNNNGTC	1 cut(s)	238
DseDI	GACNNNNNNGTC	1 cut(s)	238
Eco147I	AGGCCT	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	224
EcoT22I	ATGCAT	1 cut(s)	115
FaeI	CATG	1 cut(s)	65
FaiI	YATR	4 cut(s)	63, 102, 129, 176
FatI	CATG	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	12
FokI	GGATG	3 cut(s)	50, 79, 107
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	265
HgaI	GACGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	268
Hin1II	CATG	1 cut(s)	65
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	243
Hpy99I	CGWCG	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	113, 122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
Hsp92I	GRCGYC	1 cut(s)	268
Hsp92II	CATG	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	12, 78
LpnPI	CCDG	3 cut(s)	34, 38, 212
MalI	GATC	2 cut(s)	14, 80
MboI	GATC	2 cut(s)	12, 78
MboII	GAAGA	1 cut(s)	88
MluCI	AATT	5 cut(s)	117, 134, 156, 202, 222
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	1 cut(s)	246
Mph1103I	ATGCAT	1 cut(s)	115
MseI	TTAA	2 cut(s)	116, 159
MspI	CCGG	1 cut(s)	265
Mva1269I	GAATGC	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	2 cut(s)	12, 78
NlaIII	CATG	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	115
PceI	AGGCCT	1 cut(s)	20
PctI	GAATGC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	152
PflFI	GACNNNGTC	1 cut(s)	235
PshBI	ATTAAT	1 cut(s)	116
PsyI	GACNNNGTC	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	116, 159
Sau3AI	GATC	2 cut(s)	12, 78
SetI	ASST	4 cut(s)	165, 236, 257, 263
Sse9I	AATT	5 cut(s)	117, 134, 156, 202, 222
SseBI	AGGCCT	1 cut(s)	20
SsiI	CCGC	1 cut(s)	274
StuI	AGGCCT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	257
TasI	AATT	5 cut(s)	117, 134, 156, 202, 222
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	2 cut(s)	116, 159
Tru9I	TTAA	2 cut(s)	116, 159
TscAI	CASTG	1 cut(s)	129
TspDTI	ATGAA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	129
Tth111I	GACNNNGTC	1 cut(s)	235
VspI	ATTAAT	1 cut(s)	116
XapI	RAATTY	2 cut(s)	134, 202
Zsp2I	ATGCAT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.