RchiOBHm_Chr4g0392471

C2 domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
7957570 .. 7963989
6420 bp
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UTR
Exon/CDS
Intron
PRQ36523

Sequence Viewer

Length: 285 bp
ATGTTGATGTCATTGGCACAGAGTTTACAGGTCTCGAAATGGGTTTACAGTAAAGGCGTTGTTCAGCACCTTTATTTCGGAAGGAACCCACCCATGTTCACAGAGATGAGACTTCTCCGCCAGTCTACTGGTGATGACCATTTGGGCTGTTCACTCGGGATTGGAAAAGACTCTTTTGCCCTTTGTTTTCGGTTTAGTTACGGTTTTGTTGTAGGTGATGAGAGGAGAGAGAAACAGCTGTTGCCGTGCAAATCAGAAGGAAGTGGTTGTGATAGAAAGGGATAG

Protein Analysis

94

Amino Acids

10.58

Weight (kDa)

9.05

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018999)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 125
AciI CCGC 1 cut(s) 118
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Alw26I GTCTC 2 cut(s) 37, 103
Ama87I CYCGRG 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 143, 227
AvaI CYCGRG 1 cut(s) 155
BceAI ACGGC 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 37, 103
BmeT110I CYCGRG 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 37
Bse1I ACTGG 2 cut(s) 121, 133
BseNI ACTGG 2 cut(s) 121, 133
BseRI GAGGAG 1 cut(s) 238
BsiHKCI CYCGRG 1 cut(s) 155
BsmAI GTCTC 2 cut(s) 37, 103
Bso31I GGTCTC 1 cut(s) 37
BsoBI CYCGRG 1 cut(s) 155
BspACI CCGC 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 37
BsrI ACTGG 2 cut(s) 121, 133
Bst4CI ACNGT 2 cut(s) 50, 203
BstMAI GTCTC 2 cut(s) 37, 103
BstXI CCANNNNNNTGG 1 cut(s) 128
CviAII CATG 1 cut(s) 94
CviJI RGCY 2 cut(s) 147, 238
CviKI_1 RGCY 2 cut(s) 147, 238
EciI GGCGGA 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 155
FaeI CATG 1 cut(s) 97
FaiI YATR 1 cut(s) 95
FatI CATG 1 cut(s) 93
FblI GTMKAC 1 cut(s) 125
Hin1II CATG 1 cut(s) 97
HinfI GANTC 1 cut(s) 170
HphI GGTGA 2 cut(s) 143, 227
Hpy166II GTNNAC 5 cut(s) 26, 46, 99, 126, 152
Hpy188I TCNGA 2 cut(s) 80, 256
Hpy188III TCNNGA 2 cut(s) 34, 157
Hpy8I GTNNAC 5 cut(s) 26, 46, 99, 126, 152
HpyAV CCTTC 2 cut(s) 75, 251
HpyCH4III ACNGT 2 cut(s) 50, 203
HpyCH4V TGCA 1 cut(s) 249
Hsp92II CATG 1 cut(s) 97
LpnPI CCDG 3 cut(s) 14, 114, 134
MaeIII GTNAC 1 cut(s) 197
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 238
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 86
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 86
PvuII CAGCTG 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 104
SchI GAGTC 1 cut(s) 164
SetI ASST 4 cut(s) 33, 72, 217, 240
SgeI CNNG 8 cut(s) 41, 46, 106, 133, 141, 167, 169, 258
SmiMI CAYNNNNRTG 1 cut(s) 104
SsiI CCGC 1 cut(s) 118
TaaI ACNGT 2 cut(s) 50, 203
TaqI TCGA 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.