Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0018999

Physical Location & Seq

Genomic Coordinates Reverse (-)

83893334 .. 83902139

Gene Structure 8806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG532800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTCTTGGTCGATTTCAGTCTGTTCCCAATTGGGGAATTTCCGTTTCACATTCAAAGTATCAATCTTTAAAGATTGTCGAGAATTGATTGCATTGGACTACTGGGAGAATGGGGCAAGAAGCCCTTGGAAATTGGGTGGATACACTCATGACATTCATATGACTTTGCATAGGAGTAAAGTCGACTGTCCACAGCTTGAGGAAATGGCCACTGTCAGTTTTGATGGTGCTGTACTCAGACAAATTCCTGCAAGTATGTCATATCTTTGTGTTGGATCTTCTGGCAAGGCTGACAAGAAGAAAAAGAAGGGGAAAGATGCAAAAGTTGTTGCATATCTTTCAGACAAAGAAATCTTTTATGTTGAAGATAAAGATGGATACAGGGATATACTGAAGTTAGTTGGCAAGATACCTTTTACACTACTGATGCTACAAGTTTCCTTTGAAGTTTCAAGTGATCTCATAATTCAAGTGAAGGGAAGCAGATATTTGCTTCACAAGGCTTTATCACACAAACATTTGGGCCTAAACATATTTAAGGCCTCATACGAACAGAATCGAGTGGGTAAACCAACGCGGGACCCAAACTTTTTCAAATTTCACAACCTTCTGAAAACCCCCGCTTTAACAAAGCAAATCCCATTCGCGAATTCCAGAGCACGCGGATCGCAATCCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016070 GO:0016071 GO:0022402 GO:0030071 GO:0031577 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033365 GO:0034501 GO:0034502 GO:0034613 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051641 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0070013 GO:0070727 GO:0071005 GO:0071011 GO:0071173 GO:0071174 GO:0071459 GO:0071704 GO:0090304 GO:1901360 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990904 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RED_C RED_N

Protein Analysis

226

Amino Acids

25.66

Weight (kDa)

9.64

Isoelectric Point (pI)

30.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RED_N	PF07808	48 - 102	2.7e-10	RED-like protein N-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0018999)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0392471
rosa_laevigata	RLG00000003406
rosa_samantha	Rh2AG371500 Rh2BG380000 Rh2CG359100 Rh4CG046100 Rh4DG040200 Rh5BG532800 Rh5DG544800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	3 cut(s)	577, 647, 663
AciI	CCGC	3 cut(s)	577, 621, 663
AclWI	GGATC	2 cut(s)	283, 673
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	4 cut(s)	37, 243, 596, 649
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	33
AgsI	TTSAA	6 cut(s)	55, 365, 446, 453, 470, 595
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
Alw21I	GWGCWC	1 cut(s)	661
AlwI	GGATC	2 cut(s)	283, 673
AoxI	GGCC	3 cut(s)	207, 523, 540
ApoI	RAATTY	4 cut(s)	37, 243, 596, 649
AspS9I	GGNCC	2 cut(s)	523, 580
AvaII	GGWCC	1 cut(s)	580
BalI	TGGCCA	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	661
BccI	CCATC	2 cut(s)	218, 368
BcgI	CGANNNNNNTGC	1 cut(s)	648
BciVI	GTATCC	2 cut(s)	134, 371
BfmI	CTRYAG	1 cut(s)	677
BfuI	GTATCC	2 cut(s)	134, 371
Bme18I	GGWCC	1 cut(s)	580
BmgT120I	GGNCC	2 cut(s)	523, 580
BmiI	GGNNCC	2 cut(s)	581, 582
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	307, 417
BmuI	ACTGGG	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	218
BsaBI	GATNNNNATC	1 cut(s)	670
BsaJI	CCNNGG	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	107
Bse8I	GATNNNNATC	1 cut(s)	670
BseDI	CCNNGG	1 cut(s)	125
BseJI	GATNNNNATC	1 cut(s)	670
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	250
BseNI	ACTGG	1 cut(s)	107
Bsh1236I	CGCG	3 cut(s)	577, 647, 663
BshFI	GGCC	3 cut(s)	209, 525, 542
BsiHKAI	GWGCWC	1 cut(s)	661
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	593
BsnI	GGCC	3 cut(s)	209, 525, 542
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp143I	GATC	3 cut(s)	275, 457, 665
Bsp68I	TCGCGA	1 cut(s)	647
BspACI	CCGC	3 cut(s)	577, 621, 663
BspANI	GGCC	3 cut(s)	209, 525, 542
BspCNI	CTCAG	1 cut(s)	249
BspFNI	CGCG	3 cut(s)	577, 647, 663
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	581, 582
BspPI	GGATC	2 cut(s)	283, 673
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	125
BssMI	GATC	3 cut(s)	275, 457, 665
BssT1I	CCWWGG	1 cut(s)	125
Bst4CI	ACNGT	2 cut(s)	188, 214
BstC8I	GCNNGC	1 cut(s)	661
BstDEI	CTNAG	1 cut(s)	236
BstFNI	CGCG	3 cut(s)	577, 647, 663
BstKTI	GATC	3 cut(s)	278, 460, 668
BstMBI	GATC	3 cut(s)	275, 457, 665
BstSFI	CTRYAG	1 cut(s)	677
BstUI	CGCG	3 cut(s)	577, 647, 663
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BsuI	GTATCC	2 cut(s)	134, 371
BsuRI	GGCC	3 cut(s)	209, 525, 542
BtsIMutI	CAGTG	1 cut(s)	210
BtuMI	TCGCGA	1 cut(s)	647
Cac8I	GCNNGC	1 cut(s)	661
CciI	TCATGA	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	523, 580
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	7 cut(s)	123, 196, 209, 290, 503, 525, 542
CviKI_1	RGCY	7 cut(s)	123, 196, 209, 290, 503, 525, 542
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	3 cut(s)	277, 459, 667
DpnII	GATC	3 cut(s)	275, 457, 665
DraI	TTTAAA	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	125
Eco147I	AGGCCT	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	580
Eco57I	CTGAAG	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	580
EcoRI	GAATTC	1 cut(s)	649
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	1 cut(s)	152
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	1 cut(s)	148
FauI	CCCGC	2 cut(s)	570, 628
FauNDI	CATATG	1 cut(s)	159
FblI	GTMKAC	1 cut(s)	183
HaeIII	GGCC	3 cut(s)	209, 525, 542
Hin1II	CATG	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	556
Hpy166II	GTNNAC	3 cut(s)	184, 191, 569
Hpy188I	TCNGA	3 cut(s)	239, 343, 612
Hpy188III	TCNNGA	4 cut(s)	80, 149, 646, 654
Hpy8I	GTNNAC	3 cut(s)	184, 191, 569
HpyAV	CCTTC	3 cut(s)	301, 469, 617
HpyCH4III	ACNGT	2 cut(s)	188, 214
HpyCH4V	TGCA	5 cut(s)	92, 169, 251, 320, 332
HpyF3I	CTNAG	1 cut(s)	236
Hsp92II	CATG	1 cut(s)	152
KflI	GGGWCCC	1 cut(s)	580
Kzo9I	GATC	3 cut(s)	275, 457, 665
LpnPI	CCDG	5 cut(s)	88, 261, 267, 367, 667
LweI	GCATC	2 cut(s)	307, 417
MalI	GATC	3 cut(s)	277, 459, 667
MboI	GATC	3 cut(s)	275, 457, 665
MboII	GAAGA	3 cut(s)	270, 310, 377
MfeI	CAATTG	1 cut(s)	29
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	1 cut(s)	661
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	8 cut(s)	29, 37, 83, 131, 243, 465, 596, 649
MluNI	TGGCCA	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	2 cut(s)	193, 553
Mox20I	TGGCCA	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	3 cut(s)	69, 537, 626
MslI	CAYNNNNRTG	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	209
MunI	CAATTG	1 cut(s)	29
MvnI	CGCG	3 cut(s)	577, 647, 663
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	3 cut(s)	275, 457, 665
NlaIII	CATG	1 cut(s)	152
NlaIV	GGNNCC	2 cut(s)	581, 582
NruI	TCGCGA	1 cut(s)	647
PagI	TCATGA	1 cut(s)	148
PceI	AGGCCT	1 cut(s)	542
PfeI	GAWTC	1 cut(s)	556
PpuMI	RGGWCCY	1 cut(s)	580
Psp5II	RGGWCCY	1 cut(s)	580
PspN4I	GGNNCC	2 cut(s)	581, 582
PspPI	GGNCC	2 cut(s)	523, 580
PspPPI	RGGWCCY	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	275
RruI	TCGCGA	1 cut(s)	647
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
RseI	CAYNNNNRTG	1 cut(s)	158
SalI	GTCGAC	1 cut(s)	182
SaqAI	TTAA	3 cut(s)	69, 537, 626
Sau3AI	GATC	3 cut(s)	275, 457, 665
Sau96I	GGNCC	2 cut(s)	523, 580
SduI	GDGCHC	1 cut(s)	661
SetI	ASST	3 cut(s)	198, 415, 609
SfaNI	GCATC	2 cut(s)	307, 417
SfcI	CTRYAG	1 cut(s)	677
SinI	GGWCC	1 cut(s)	580
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	8 cut(s)	29, 37, 83, 131, 243, 465, 596, 649
SseBI	AGGCCT	1 cut(s)	542
SsiI	CCGC	3 cut(s)	577, 621, 663
StuI	AGGCCT	1 cut(s)	542
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	2 cut(s)	188, 214
TaqI	TCGA	4 cut(s)	11, 79, 183, 559
TasI	AATT	8 cut(s)	29, 37, 83, 131, 243, 465, 596, 649
TatI	WGTACW	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	3 cut(s)	69, 537, 626
Tru9I	TTAA	3 cut(s)	69, 537, 626
TscAI	CASTG	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	580
XapI	RAATTY	4 cut(s)	37, 243, 596, 649
XmiI	GTMKAC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.