Rh4DG040200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0018999
Physical Location & Seq
Forward (+)
6532029 .. 6538292
6264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG040200.1

Sequence Viewer

Length: 279 bp
ATGGGAATCGAGGTTGTGTACGAGGAAGAAGAGAAAATGAGTAGCCAACAAAACTCCTCAGATCCTTATTACGATCCAGATGTTGATGTCATTGGCACAGAGTTTACAGGTTGCTTGCTTCAATTTTGGACTTGTTGGGATTTAGGCGGAATCGGAACGAGGCAGCATCAGCCAGAGGTCGCTGAGAAGCTCTTCAAGATTCTCGACTTACACGACTTGATTCCGTGTTTGAATGGACGTCGTCGTCGGAGACCCACCGGGTCGCGAGTAAAGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.57

Weight (kDa)

5.06

Isoelectric Point (pI)

78.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018999)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0392471
rosa_laevigata RLG00000003406
rosa_samantha Rh2AG371500 Rh2BG380000 Rh2CG359100 Rh4CG046100 Rh4DG040200 Rh5BG532800 Rh5DG544800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 243
AatII GACGTC 1 cut(s) 241
AccII CGCG 1 cut(s) 265
AciI CCGC 1 cut(s) 147
AclWI GGATC 2 cut(s) 56, 68
AcyI GRCGYC 1 cut(s) 238
AfaI GTAC 1 cut(s) 20
AgsI TTSAA 3 cut(s) 122, 196, 232
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 2 cut(s) 56, 68
ApeKI GCWGC 1 cut(s) 163
Asp700I GAANNNNTTC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 259
BbvI GCAGC 1 cut(s) 175
BcnI CCSGG 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 244
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 259
BmsI GCATC 1 cut(s) 175
BpuMI CCSGG 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 238
BsaI GGTCTC 1 cut(s) 244
BseMII CTCAG 2 cut(s) 72, 174
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 175
Bsh1236I CGCG 1 cut(s) 265
BsiSI CCGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 244
Bso31I GGTCTC 1 cut(s) 244
Bsp143I GATC 2 cut(s) 61, 73
Bsp68I TCGCGA 1 cut(s) 265
BspACI CCGC 1 cut(s) 147
BspCNI CTCAG 2 cut(s) 71, 175
BspFNI CGCG 1 cut(s) 265
BspPI GGATC 2 cut(s) 56, 68
BspQI GCTCTTC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 244
BssMI GATC 2 cut(s) 61, 73
BssNI GRCGYC 1 cut(s) 238
Bst6I CTCTTC 2 cut(s) 24, 197
BstACI GRCGYC 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 2 cut(s) 58, 183
BstFNI CGCG 1 cut(s) 265
BstKTI GATC 2 cut(s) 64, 76
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 2 cut(s) 61, 73
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 257
BstUI CGCG 1 cut(s) 265
BstV1I GCAGC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BtuMI TCGCGA 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 19
CviJI RGCY 3 cut(s) 45, 172, 190
CviKI_1 RGCY 3 cut(s) 45, 172, 190
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 2 cut(s) 58, 183
DpnI GATC 2 cut(s) 63, 75
DpnII GATC 2 cut(s) 61, 73
DrdI GACNNNNNNGTC 1 cut(s) 243
DseDI GACNNNNNNGTC 1 cut(s) 243
Eam1104I CTCTTC 2 cut(s) 24, 197
EarI CTCTTC 2 cut(s) 24, 197
EciI GGCGGA 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 164
HapII CCGG 1 cut(s) 258
Hin1I GRCGYC 1 cut(s) 238
HinfI GANTC 4 cut(s) 6, 150, 199, 220
HpaII CCGG 1 cut(s) 258
Hpy166II GTNNAC 2 cut(s) 19, 105
Hpy188I TCNGA 3 cut(s) 61, 155, 249
Hpy188III TCNNGA 4 cut(s) 77, 196, 203, 264
Hpy8I GTNNAC 2 cut(s) 19, 105
Hpy99I CGWCG 3 cut(s) 243, 246, 249
HpyCH4IV ACGT 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 2 cut(s) 58, 183
HpySE526I ACGT 1 cut(s) 238
Hsp92I GRCGYC 1 cut(s) 238
Kzo9I GATC 2 cut(s) 61, 73
LguI GCTCTTC 1 cut(s) 197
LpnPI CCDG 4 cut(s) 90, 93, 186, 271
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 175
MaeII ACGT 1 cut(s) 238
MalI GATC 2 cut(s) 63, 75
MboI GATC 2 cut(s) 61, 73
MboII GAAGA 3 cut(s) 38, 41, 184
MflI RGATCY 1 cut(s) 61
MluCI AATT 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 227
MnlI CCTC 5 cut(s) 4, 16, 67, 153, 169
MroXI GAANNNNTTC 1 cut(s) 191
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 259
MvnI CGCG 1 cut(s) 265
MwoI GCNNNNNNNGC 1 cut(s) 169
NciI CCSGG 1 cut(s) 259
NdeII GATC 2 cut(s) 61, 73
NruI TCGCGA 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 4 cut(s) 6, 150, 199, 220
PflFI GACNNNGTC 1 cut(s) 240
PkrI GCNGC 1 cut(s) 165
PsuI RGATCY 1 cut(s) 61
PsyI GACNNNGTC 1 cut(s) 240
RruI TCGCGA 1 cut(s) 265
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SapI GCTCTTC 1 cut(s) 197
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 2 cut(s) 61, 73
ScrFI CCNGG 1 cut(s) 259
SetI ASST 5 cut(s) 15, 112, 180, 192, 241
SfaNI GCATC 1 cut(s) 175
Sse9I AATT 1 cut(s) 122
SsiI CCGC 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 257
TaiI ACGT 1 cut(s) 241
TaqI TCGA 2 cut(s) 9, 204
TasI AATT 1 cut(s) 122
TfiI GAWTC 4 cut(s) 6, 150, 199, 220
TseI GCWGC 1 cut(s) 163
TspGWI ACGGA 1 cut(s) 213
Tth111I GACNNNGTC 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 191
ZraI GACGTC 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.