Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0018999

Physical Location & Seq

Genomic Coordinates Reverse (-)

83826549 .. 83837484

Gene Structure 10936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG544800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTCTTGGTCGATATCAGTCTGTTCCCAATTAGGGAATTTCCGTTTCACATTCAAAGTTTCAATCTTTAAAGGTTGTCGAGAATTGATTGCATTGGACTACTGGGAGAATGGGTGTTGTAAAGGCGAACCCGCATTTGGACTCATCATCGAGGACAGTAGCATCACTTACTGGCAGAGTAAAGTCGACTGTCCACAGCTTGAGGAAATGGCCACTGTCAGTTTTGATGGTGCTGTACTTGGACAAATTCCTGCAAGTATGTCATATCTTTGTGTTGGATCTTCTGGCAAGGCTGACAAGAAGAAAAAGAAGGGGAAAGATGCAAAAGGTCACACAGTTTCCACTTCTGTCAAACTGTTTGAGGATGCGGAAGCTCTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016070 GO:0016071 GO:0022402 GO:0030071 GO:0031577 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033365 GO:0034501 GO:0034502 GO:0034613 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051641 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0070013 GO:0070727 GO:0071005 GO:0071011 GO:0071173 GO:0071174 GO:0071459 GO:0071704 GO:0090304 GO:1901360 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990904 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RED_C RED_N

Protein Analysis

127

Amino Acids

13.89

Weight (kDa)

6.56

Isoelectric Point (pI)

26.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RED_N	PF07808	56 - 103	8.3e-07	RED-like protein N-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0018999)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0392471
rosa_laevigata	RLG00000003406
rosa_samantha	Rh2AG371500 Rh2BG380000 Rh2CG359100 Rh4CG046100 Rh4DG040200 Rh5BG532800 Rh5DG544800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	2 cut(s)	132, 368
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	2 cut(s)	37, 246
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	2 cut(s)	33, 137
AgsI	TTSAA	2 cut(s)	55, 63
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	2 cut(s)	199, 374
AluI	AGCT	2 cut(s)	199, 374
AlwI	GGATC	1 cut(s)	286
AoxI	GGCC	1 cut(s)	210
ApoI	RAATTY	2 cut(s)	37, 246
BalI	TGGCCA	1 cut(s)	212
BccI	CCATC	1 cut(s)	221
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	3 cut(s)	171, 310, 355
BmuI	ACTGGG	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 137
Bse1I	ACTGG	2 cut(s)	107, 176
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	2 cut(s)	33, 137
BseNI	ACTGG	2 cut(s)	107, 176
BshFI	GGCC	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	33, 137
BsnI	GGCC	1 cut(s)	212
Bsp143I	GATC	1 cut(s)	278
BspACI	CCGC	2 cut(s)	132, 368
BspANI	GGCC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	107, 176
BssMI	GATC	1 cut(s)	278
Bst4CI	ACNGT	5 cut(s)	158, 191, 217, 337, 357
BstF5I	GGATG	1 cut(s)	370
BstKTI	GATC	1 cut(s)	281
BstMBI	GATC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	236
CviJI	RGCY	4 cut(s)	199, 212, 293, 374
CviKI_1	RGCY	4 cut(s)	199, 212, 293, 374
CviQI	GTAC	1 cut(s)	236
DpnI	GATC	1 cut(s)	280
DpnII	GATC	1 cut(s)	278
DraI	TTTAAA	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	15
EcoRV	GATATC	1 cut(s)	15
FaiI	YATR	2 cut(s)	260, 265
FalI	AAGNNNNNCTT	1 cut(s)	363
FauI	CCCGC	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	186
FokI	GGATG	1 cut(s)	377
HaeIII	GGCC	1 cut(s)	212
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	141
Hpy166II	GTNNAC	2 cut(s)	187, 194
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	2 cut(s)	187, 194
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	5 cut(s)	158, 191, 217, 337, 357
HpyCH4V	TGCA	3 cut(s)	92, 254, 323
Kzo9I	GATC	1 cut(s)	278
LpnPI	CCDG	4 cut(s)	88, 157, 264, 270
LweI	GCATC	3 cut(s)	171, 310, 355
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	1 cut(s)	280
MboI	GATC	1 cut(s)	278
MboII	GAAGA	2 cut(s)	273, 313
MflI	RGATCY	1 cut(s)	278
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	4 cut(s)	29, 37, 83, 246
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	135
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	3 cut(s)	145, 196, 355
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	1 cut(s)	69
Msp20I	TGGCCA	1 cut(s)	212
NdeII	GATC	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	329
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	278
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SalI	GTCGAC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	278
SchI	GAGTC	1 cut(s)	135
SetI	ASST	4 cut(s)	76, 201, 331, 376
SfaNI	GCATC	3 cut(s)	171, 310, 355
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	4 cut(s)	29, 37, 83, 246
SsiI	CCGC	2 cut(s)	132, 368
TaaI	ACNGT	5 cut(s)	158, 191, 217, 337, 357
TaqI	TCGA	4 cut(s)	11, 79, 150, 186
TasI	AATT	4 cut(s)	29, 37, 83, 246
TatI	WGTACW	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	329
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	220
XapI	RAATTY	2 cut(s)	37, 246
XmiI	GTMKAC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.