RchiOBHm_Chr4g0395241

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0019000
Physical Location & Seq
Reverse (-)
10993186 .. 10994310
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36769

Sequence Viewer

Length: 330 bp
ATGATGCTTCTCCTATCTCTTTGTCTTGCAAATCATATCCCTGGGAATATACTACTTGTTAAGTTAGGATCACAAGTTAACTGGCCATCATCAGTGGATATTAGAACTCTGCTTTGGCTCCAGAATAGTACCCCAGTTGTCTTTTCATCAGCTGCCGTGCTTTCCAAGGTCTCTCCAAACAGGCCAACAAGAGGATCATCCCAAGAAACAGAGATGTCTGGGCAGGAGATATCTGGACATTGGCTTCCTCCTCAAATGCTTCTGCAGTTTTCTTTTCTCGAGACCAATTTCATCAGCACCCGAGGCCAATCAGCAAGACTTGCCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.01

Weight (kDa)

9.3

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019000)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0395241
rosa_laevigata RLG00000009639
rosa_samantha Rh1DG445900 Rh1DG446000 Rh4AG057500 Rh4AG057600 Rh4BG056400 Rh6BG208600
rosa_wichuraiana Rw4G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 76, 202
AcoI YGGCCR 1 cut(s) 83
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 191
AjnI CCWGG 1 cut(s) 40
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 2 cut(s) 175, 275
AlwI GGATC 2 cut(s) 76, 202
Ama87I CYCGRG 2 cut(s) 278, 300
AoxI GGCC 3 cut(s) 83, 182, 304
ApeKI GCWGC 1 cut(s) 152
AvaI CYCGRG 2 cut(s) 278, 300
BalI TGGCCA 1 cut(s) 85
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 42
BcoDI GTCTC 2 cut(s) 175, 275
BfmI CTRYAG 1 cut(s) 263
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 42
BmeT110I CYCGRG 2 cut(s) 278, 300
BmiI GGNNCC 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 42
BmrI ACTGGG 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 104
BsaI GGTCTC 2 cut(s) 175, 275
BsaJI CCNNGG 4 cut(s) 40, 41, 165, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 2 cut(s) 86, 134
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 4 cut(s) 40, 41, 165, 301
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 1 cut(s) 191
BseNI ACTGG 2 cut(s) 86, 134
BseRI GAGGAG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 3 cut(s) 85, 184, 306
BsiHKCI CYCGRG 2 cut(s) 278, 300
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 2 cut(s) 175, 275
BsnI GGCC 3 cut(s) 85, 184, 306
Bso31I GGTCTC 2 cut(s) 175, 275
BsoBI CYCGRG 2 cut(s) 278, 300
Bsp143I GATC 2 cut(s) 68, 194
BspANI GGCC 3 cut(s) 85, 184, 306
BspLI GGNNCC 1 cut(s) 119
BspMAI CTGCAG 1 cut(s) 267
BspPI GGATC 2 cut(s) 76, 202
BspTNI GGTCTC 2 cut(s) 175, 275
BsrI ACTGG 2 cut(s) 86, 134
BssECI CCNNGG 4 cut(s) 40, 41, 165, 301
BssMI GATC 2 cut(s) 68, 194
BssT1I CCWWGG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 320
BstF5I GGATG 1 cut(s) 197
BstKTI GATC 2 cut(s) 71, 197
BstMAI GTCTC 2 cut(s) 175, 275
BstMBI GATC 2 cut(s) 68, 194
BstMWI GCNNNNNNNGC 2 cut(s) 303, 320
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BstSFI CTRYAG 1 cut(s) 263
BstV1I GCAGC 1 cut(s) 139
BsuRI GGCC 3 cut(s) 85, 184, 306
BtsCI GGATG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 99
Csp6I GTAC 1 cut(s) 129
CviJI RGCY 6 cut(s) 85, 118, 152, 184, 244, 306
CviKI_1 RGCY 6 cut(s) 85, 118, 152, 184, 244, 306
CviQI GTAC 1 cut(s) 129
DpnI GATC 2 cut(s) 70, 196
DpnII GATC 2 cut(s) 68, 194
EaeI YGGCCR 1 cut(s) 83
Eco130I CCWWGG 1 cut(s) 165
Eco31I GGTCTC 2 cut(s) 175, 275
Eco32I GATATC 1 cut(s) 231
Eco88I CYCGRG 2 cut(s) 278, 300
EcoRII CCWGG 1 cut(s) 40
EcoRV GATATC 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaiI YATR 2 cut(s) 36, 50
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 104
HaeIII GGCC 3 cut(s) 85, 184, 306
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HpaI GTTAAC 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 79
Hpy188III TCNNGA 4 cut(s) 121, 234, 278, 280
Hpy8I GTNNAC 1 cut(s) 79
HpyCH4V TGCA 2 cut(s) 29, 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 303, 320
KspAI GTTAAC 1 cut(s) 79
Kzo9I GATC 2 cut(s) 68, 194
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 9 cut(s) 27, 54, 67, 134, 147, 166, 204, 209, 219
Lsp1109I GCAGC 1 cut(s) 139
MalI GATC 2 cut(s) 70, 196
MboI GATC 2 cut(s) 68, 194
MlsI TGGCCA 1 cut(s) 85
MluCI AATT 1 cut(s) 286
MluNI TGGCCA 1 cut(s) 85
MnlI CCTC 4 cut(s) 185, 258, 261, 296
Mox20I TGGCCA 1 cut(s) 85
MscI TGGCCA 1 cut(s) 85
MseI TTAA 2 cut(s) 60, 78
Msp20I TGGCCA 1 cut(s) 85
MspA1I CMGCKG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
MwoI GCNNNNNNNGC 2 cut(s) 303, 320
NdeII GATC 2 cut(s) 68, 194
NlaIV GGNNCC 1 cut(s) 119
PaeR7I CTCGAG 1 cut(s) 278
PasI CCCWGGG 1 cut(s) 41
PkrI GCNGC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 119
PstI CTGCAG 1 cut(s) 267
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SaqAI TTAA 2 cut(s) 60, 78
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 68, 194
ScrFI CCNGG 1 cut(s) 42
SetI ASST 2 cut(s) 154, 171
SfcI CTRYAG 1 cut(s) 263
Sfr274I CTCGAG 1 cut(s) 278
SlaI CTCGAG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 1 cut(s) 286
StyD4I CCNGG 1 cut(s) 40
StyI CCWWGG 1 cut(s) 165
TaqI TCGA 1 cut(s) 279
TasI AATT 1 cut(s) 286
Tru1I TTAA 2 cut(s) 60, 78
Tru9I TTAA 2 cut(s) 60, 78
TscAI CASTG 1 cut(s) 99
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 135, 280
TspRI CASTG 1 cut(s) 99
XhoI CTCGAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.