RLG00000009639

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0019000
Physical Location & Seq
Forward (+)
55744696 .. 55745340
645 bp
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UTR
Exon/CDS
Intron
RLM00000009639

Sequence Viewer

Length: 357 bp
ATGATGCTTCTTCTATCTCTTTGTCTTGCAAATCATATCCCTGGGAATATACTACTTGTTAAGTTAGGATCACAAGTTAACTGGCCATCATCAGTGGATATTAGAACTCTGCTTTGGCTCCAGACTAGTGCCCCAGTTGTCTTTTCATCAGCTGCCGTGCCTTCCAAGGTCTCTCCGAACAGGCCAACAAGAGGATCATCCCAAGAAACAGAGATGTCTGGGCAGGAGATATCTGGACCTTGGCTCCTCAAATGCTCCTGCAGTTTTCTTTTCTCGACACCAATTTCATCAGCACCCGAGGCCAATCAGCAAGACTTGCCCAATAGTGAATATTATGAGTTTTTGGGTAACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.84

Weight (kDa)

4.94

Isoelectric Point (pI)

65.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019000)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0395241
rosa_laevigata RLG00000009639
rosa_samantha Rh1DG445900 Rh1DG446000 Rh4AG057500 Rh4AG057600 Rh4BG056400 Rh6BG208600
rosa_wichuraiana Rw4G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 76, 202
AcoI YGGCCR 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 191
AhlI ACTAGT 1 cut(s) 125
AjnI CCWGG 1 cut(s) 40
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 2 cut(s) 76, 202
Ama87I CYCGRG 1 cut(s) 296
AoxI GGCC 3 cut(s) 83, 182, 300
ApeKI GCWGC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 236
AvaI CYCGRG 1 cut(s) 296
AvaII GGWCC 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 133
BalI TGGCCA 1 cut(s) 85
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 175
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 259
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 236
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 119, 245
BmrFI CCNGG 1 cut(s) 42
BmrI ACTGGG 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 175
BsaJI CCNNGG 5 cut(s) 40, 41, 165, 239, 297
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 2 cut(s) 86, 134
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 5 cut(s) 40, 41, 165, 239, 297
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 1 cut(s) 191
BseNI ACTGG 2 cut(s) 86, 134
BseRI GAGGAG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 133
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 3 cut(s) 85, 184, 302
BsiHKCI CYCGRG 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 175
BsnI GGCC 3 cut(s) 85, 184, 302
Bso31I GGTCTC 1 cut(s) 175
BsoBI CYCGRG 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 2 cut(s) 68, 194
BspANI GGCC 3 cut(s) 85, 184, 302
BspLI GGNNCC 2 cut(s) 119, 245
BspMAI CTGCAG 1 cut(s) 263
BspPI GGATC 2 cut(s) 76, 202
BspTNI GGTCTC 1 cut(s) 175
BsrI ACTGG 2 cut(s) 86, 134
BssECI CCNNGG 5 cut(s) 40, 41, 165, 239, 297
BssMI GATC 2 cut(s) 68, 194
BssT1I CCWWGG 2 cut(s) 165, 239
Bst2UI CCWGG 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 316
BstF5I GGATG 1 cut(s) 197
BstKTI GATC 2 cut(s) 71, 197
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 2 cut(s) 68, 194
BstMWI GCNNNNNNNGC 2 cut(s) 299, 316
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BstSFI CTRYAG 1 cut(s) 259
BstSLI GKGCMC 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 139
BsuRI GGCC 3 cut(s) 85, 184, 302
BtsCI GGATG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 236
CviJI RGCY 6 cut(s) 85, 118, 152, 184, 244, 302
CviKI_1 RGCY 6 cut(s) 85, 118, 152, 184, 244, 302
DpnI GATC 2 cut(s) 70, 196
DpnII GATC 2 cut(s) 68, 194
EaeI YGGCCR 1 cut(s) 83
Eco130I CCWWGG 2 cut(s) 165, 239
Eco31I GGTCTC 1 cut(s) 175
Eco32I GATATC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 40
EcoRV GATATC 1 cut(s) 231
EcoT14I CCWWGG 2 cut(s) 165, 239
ErhI CCWWGG 2 cut(s) 165, 239
FaiI YATR 3 cut(s) 36, 50, 336
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 126
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 104
HaeIII GGCC 3 cut(s) 85, 184, 302
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HpaI GTTAAC 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 3 cut(s) 121, 234, 274
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 29, 261
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 316
KspAI GTTAAC 1 cut(s) 79
Kzo9I GATC 2 cut(s) 68, 194
LmnI GCTCC 3 cut(s) 123, 249, 260
Lsp1109I GCAGC 1 cut(s) 139
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 347
MalI GATC 2 cut(s) 70, 196
MboI GATC 2 cut(s) 68, 194
MhlI GDGCHC 1 cut(s) 133
MlsI TGGCCA 1 cut(s) 85
MluCI AATT 1 cut(s) 282
MluNI TGGCCA 1 cut(s) 85
MnlI CCTC 3 cut(s) 185, 257, 292
Mox20I TGGCCA 1 cut(s) 85
MscI TGGCCA 1 cut(s) 85
MseI TTAA 2 cut(s) 60, 78
Msp20I TGGCCA 1 cut(s) 85
MspA1I CMGCKG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
MwoI GCNNNNNNNGC 2 cut(s) 299, 316
NdeII GATC 2 cut(s) 68, 194
NlaIV GGNNCC 2 cut(s) 119, 245
PasI CCCWGGG 1 cut(s) 41
PkrI GCNGC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 2 cut(s) 119, 245
PspPI GGNCC 1 cut(s) 236
PstI CTGCAG 1 cut(s) 263
PvuII CAGCTG 1 cut(s) 152
SaqAI TTAA 2 cut(s) 60, 78
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 68, 194
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 133
SetI ASST 3 cut(s) 154, 171, 241
SfcI CTRYAG 1 cut(s) 259
SinI GGWCC 1 cut(s) 236
SpeI ACTAGT 1 cut(s) 125
Sse9I AATT 1 cut(s) 282
SspI AATATT 1 cut(s) 332
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 40
StyI CCWWGG 2 cut(s) 165, 239
TaqI TCGA 1 cut(s) 275
TasI AATT 1 cut(s) 282
Tru1I TTAA 2 cut(s) 60, 78
Tru9I TTAA 2 cut(s) 60, 78
TscAI CASTG 1 cut(s) 99
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 135, 276
TspRI CASTG 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 236
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.