Rh4BG056400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0019000
Physical Location & Seq
Reverse (-)
10106413 .. 10117198
10786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG056400.1

Sequence Viewer

Length: 579 bp
ATGATGCTTCTTCTATCTCTTTGTCTTGCAAATCATACCTCTGGGAATATACTACTTCTTAAGTTAGGATCACAAGTTAACTGGCCATCATCAGTGGATATTAGAACTCTGCTTTGGCTCCAGACTAGTGCCGCAGTTGTCTTTTCATCAGCTGCCGTGCCTTCCAAGGTCTCTCCAAACAGGCCAACAAGAGGATCATCCCAAGAAACAGAGATGTCCGGGCAGGAAATATCTGGACCTTGGCTTCCTCCTCAAATGCTTCTGCAGTTTTCTTTTCTCGACACCAATTTCATCAGCACCCGAGGCCAATCAGCAAGACTTGCCCAAAGTGAATATTATGAGTTTTTGGCGGTTTCGCGGTGTTGGCACCTAATATCCAAAGAAACCTTTACCTTCTCTCTGCTGAACAGGATTTGCGGTGAGTCAGGTAGAGCTAATTCCTTCAAGGTCATTCAGGAAAATTTTGGTTTCAGATCTATAAGAGATAGTCATGAGGATCTAATGGATTCCTTGTACCTACAAGTCAAAATTTCCAGACTCTTATTTTTGTCACTCAATCACGAAGCTGGTCCTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.55

Weight (kDa)

7.77

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019000)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0395241
rosa_laevigata RLG00000009639
rosa_samantha Rh1DG445900 Rh1DG446000 Rh4AG057500 Rh4AG057600 Rh4BG056400 Rh6BG208600
rosa_wichuraiana Rw4G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 366
AccII CGCG 1 cut(s) 358
AciI CCGC 4 cut(s) 132, 350, 358, 417
AclWI GGATC 3 cut(s) 76, 202, 504
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 2 cut(s) 460, 528
AfaI GTAC 1 cut(s) 515
AfiI CCNNNNNNNGG 1 cut(s) 191
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 1 cut(s) 445
AhlI ACTAGT 1 cut(s) 125
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AluBI AGCT 3 cut(s) 152, 434, 566
AluI AGCT 3 cut(s) 152, 434, 566
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 3 cut(s) 76, 202, 504
Ama87I CYCGRG 1 cut(s) 300
AoxI GGCC 3 cut(s) 83, 182, 304
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 460, 528
AspS9I GGNCC 2 cut(s) 236, 569
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 431
AvaI CYCGRG 1 cut(s) 300
AvaII GGWCC 2 cut(s) 236, 569
BalI TGGCCA 1 cut(s) 85
BanI GGYRCC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 140
BcnI CCSGG 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 175
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 263
BfrI CTTAAG 1 cut(s) 59
BglII AGATCT 1 cut(s) 473
BisI GCNGC 2 cut(s) 132, 153
BlsI GCNGC 2 cut(s) 133, 154
Bme1390I CCNGG 1 cut(s) 220
Bme18I GGWCC 2 cut(s) 236, 569
BmeT110I CYCGRG 1 cut(s) 300
BmgT120I GGNCC 2 cut(s) 236, 569
BmiI GGNNCC 2 cut(s) 119, 368
BmrFI CCNGG 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 220
BsaI GGTCTC 1 cut(s) 175
BsaJI CCNNGG 3 cut(s) 165, 239, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 86
BseDI CCNNGG 3 cut(s) 165, 239, 301
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 1 cut(s) 191
BseNI ACTGG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 358
BshFI GGCC 3 cut(s) 85, 184, 306
BshNI GGYRCC 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 300
BsiSI CCGG 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 175
BsnI GGCC 3 cut(s) 85, 184, 306
Bso31I GGTCTC 1 cut(s) 175
BsoBI CYCGRG 1 cut(s) 300
Bsp143I GATC 4 cut(s) 68, 194, 473, 496
BspACI CCGC 4 cut(s) 132, 350, 358, 417
BspANI GGCC 3 cut(s) 85, 184, 306
BspFNI CGCG 1 cut(s) 358
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 2 cut(s) 119, 368
BspMAI CTGCAG 1 cut(s) 267
BspPI GGATC 3 cut(s) 76, 202, 504
BspT107I GGYRCC 1 cut(s) 366
BspTI CTTAAG 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 175
BsrI ACTGG 1 cut(s) 86
BssECI CCNNGG 3 cut(s) 165, 239, 301
BssMI GATC 4 cut(s) 68, 194, 473, 496
BssT1I CCWWGG 2 cut(s) 165, 239
BstAFI CTTAAG 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 320
BstF5I GGATG 1 cut(s) 197
BstFNI CGCG 1 cut(s) 358
BstKTI GATC 4 cut(s) 71, 197, 476, 499
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 4 cut(s) 68, 194, 473, 496
BstMWI GCNNNNNNNGC 3 cut(s) 303, 320, 364
BstSCI CCNGG 1 cut(s) 218
BstSFI CTRYAG 1 cut(s) 263
BstUI CGCG 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 139
BstX2I RGATCY 2 cut(s) 473, 496
BstYI RGATCY 2 cut(s) 473, 496
BsuRI GGCC 3 cut(s) 85, 184, 306
BtsCI GGATG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 99
CciI TCATGA 1 cut(s) 490
Cfr13I GGNCC 2 cut(s) 236, 569
Csp6I GTAC 1 cut(s) 514
CviAII CATG 1 cut(s) 491
CviJI RGCY 8 cut(s) 85, 118, 152, 184, 244, 306, 434, 566
CviKI_1 RGCY 8 cut(s) 85, 118, 152, 184, 244, 306, 434, 566
CviQI GTAC 1 cut(s) 514
DpnI GATC 4 cut(s) 70, 196, 475, 498
DpnII GATC 4 cut(s) 68, 194, 473, 496
EaeI YGGCCR 1 cut(s) 83
Eco130I CCWWGG 2 cut(s) 165, 239
Eco31I GGTCTC 1 cut(s) 175
Eco47I GGWCC 2 cut(s) 236, 569
Eco88I CYCGRG 1 cut(s) 300
EcoT14I CCWWGG 2 cut(s) 165, 239
ErhI CCWWGG 2 cut(s) 165, 239
FaeI CATG 1 cut(s) 494
FaiI YATR 5 cut(s) 36, 50, 339, 479, 492
FatI CATG 1 cut(s) 490
Fnu4HI GCNGC 2 cut(s) 132, 153
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 2 cut(s) 132, 153
FspBI CTAG 1 cut(s) 126
GluI GCNGC 2 cut(s) 132, 153
GsuI CTGGAG 1 cut(s) 104
HaeIII GGCC 3 cut(s) 85, 184, 306
HapII CCGG 1 cut(s) 219
Hin1II CATG 1 cut(s) 494
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 3 cut(s) 422, 506, 537
HpaI GTTAAC 1 cut(s) 79
HpaII CCGG 1 cut(s) 219
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 473
Hpy188III TCNNGA 7 cut(s) 121, 234, 278, 455, 491, 534, 560
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 3 cut(s) 171, 403, 451
HpyCH4V TGCA 2 cut(s) 29, 265
HpyF10VI GCNNNNNNNGC 3 cut(s) 303, 320, 364
Hsp92II CATG 1 cut(s) 494
KspAI GTTAAC 1 cut(s) 79
Kzo9I GATC 4 cut(s) 68, 194, 473, 496
LmnI GCTCC 1 cut(s) 123
Lsp1109I GCAGC 1 cut(s) 139
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 549
MalI GATC 4 cut(s) 70, 196, 475, 498
MboI GATC 4 cut(s) 68, 194, 473, 496
MflI RGATCY 2 cut(s) 473, 496
MlsI TGGCCA 1 cut(s) 85
MluCI AATT 4 cut(s) 286, 436, 460, 528
MluNI TGGCCA 1 cut(s) 85
MlyI GAGTC 2 cut(s) 431, 531
MnlI CCTC 6 cut(s) 49, 185, 258, 261, 296, 487
Mox20I TGGCCA 1 cut(s) 85
MscI TGGCCA 1 cut(s) 85
MseI TTAA 2 cut(s) 60, 78
Msp20I TGGCCA 1 cut(s) 85
MspA1I CMGCKG 1 cut(s) 152
MspCI CTTAAG 1 cut(s) 59
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 220
MvnI CGCG 1 cut(s) 358
MwoI GCNNNNNNNGC 3 cut(s) 303, 320, 364
NciI CCSGG 1 cut(s) 220
NdeII GATC 4 cut(s) 68, 194, 473, 496
NlaIII CATG 1 cut(s) 494
NlaIV GGNNCC 2 cut(s) 119, 368
NmuCI GTSAC 1 cut(s) 549
PagI TCATGA 1 cut(s) 490
PfeI GAWTC 1 cut(s) 506
PkrI GCNGC 2 cut(s) 133, 154
PleI GAGTC 2 cut(s) 430, 531
PpsI GAGTC 2 cut(s) 430, 531
PspN4I GGNNCC 2 cut(s) 119, 368
PspPI GGNCC 2 cut(s) 236, 569
PstI CTGCAG 1 cut(s) 267
PsuI RGATCY 2 cut(s) 473, 496
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
SaqAI TTAA 2 cut(s) 60, 78
SatI GCNGC 2 cut(s) 132, 153
Sau3AI GATC 4 cut(s) 68, 194, 473, 496
Sau96I GGNCC 2 cut(s) 236, 569
SchI GAGTC 2 cut(s) 431, 531
ScrFI CCNGG 1 cut(s) 220
SfcI CTRYAG 1 cut(s) 263
SinI GGWCC 2 cut(s) 236, 569
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
SpeI ACTAGT 1 cut(s) 125
Sse9I AATT 4 cut(s) 286, 436, 460, 528
SsiI CCGC 4 cut(s) 132, 350, 358, 417
SspI AATATT 1 cut(s) 335
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 218
StyI CCWWGG 2 cut(s) 165, 239
TaqI TCGA 1 cut(s) 279
TasI AATT 4 cut(s) 286, 436, 460, 528
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 2 cut(s) 60, 78
Tru9I TTAA 2 cut(s) 60, 78
TscAI CASTG 1 cut(s) 99
TseFI GTSAC 1 cut(s) 549
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 549
TspDTI ATGAA 2 cut(s) 135, 280
TspRI CASTG 1 cut(s) 99
Vha464I CTTAAG 1 cut(s) 59
VpaK11BI GGWCC 2 cut(s) 236, 569
XapI RAATTY 2 cut(s) 460, 528
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.