Rh4AG057600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0019000
Physical Location & Seq
Reverse (-)
12141182 .. 12143139
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG057600.1

Sequence Viewer

Length: 279 bp
ATGATCTTGCCCTGGTGTCAGCTGAACGATAACAAGGAGCTGACTAGTGCCGCAGTTGTCTTTTCATCAGCTGCCGTGCCTTCCAAGGTCTCTCCAAACAGGCCAACAAGAGGATCATCCCAAGAAACAGAGATGTCCGGGCAGGAAATATCTGGACCTTGGCTTCCTCCTCAAATGCTTCTGCAGTTTTCTTTTCTCGACACCAATTTCATCAGCACCCGAGGCCAATCAGCAAGACTTGCCCAAAGTGAATATTATGAGTTTTTGGGTAACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.2

Weight (kDa)

4.72

Isoelectric Point (pI)

59.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019000)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0395241
rosa_laevigata RLG00000009639
rosa_samantha Rh1DG445900 Rh1DG446000 Rh4AG057500 Rh4AG057600 Rh4BG056400 Rh6BG208600
rosa_wichuraiana Rw4G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 51
AclWI GGATC 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 110
AhlI ACTAGT 1 cut(s) 44
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 3 cut(s) 22, 40, 71
AluI AGCT 3 cut(s) 22, 40, 71
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 219
AoxI GGCC 2 cut(s) 101, 223
ApeKI GCWGC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 155
AsuC2I CCSGG 1 cut(s) 139
AvaI CYCGRG 1 cut(s) 219
AvaII GGWCC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 13
BcnI CCSGG 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 94
BcuI ACTAGT 1 cut(s) 44
BfaI CTAG 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 182
BisI GCNGC 2 cut(s) 51, 72
BlsI GCNGC 2 cut(s) 52, 73
Bme1390I CCNGG 2 cut(s) 13, 139
Bme18I GGWCC 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 155
BmrFI CCNGG 2 cut(s) 13, 139
BpuMI CCSGG 1 cut(s) 139
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 4 cut(s) 11, 84, 158, 220
Bsc4I CCNNNNNNNGG 1 cut(s) 110
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 4 cut(s) 11, 84, 158, 220
BseGI GGATG 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 58
BshFI GGCC 2 cut(s) 103, 225
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 94
BsnI GGCC 2 cut(s) 103, 225
Bso31I GGTCTC 1 cut(s) 94
BsoBI CYCGRG 1 cut(s) 219
Bsp143I GATC 2 cut(s) 3, 113
BspACI CCGC 1 cut(s) 51
BspANI GGCC 2 cut(s) 103, 225
BspMAI CTGCAG 1 cut(s) 186
BspPI GGATC 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 94
BssECI CCNNGG 4 cut(s) 11, 84, 158, 220
BssMI GATC 2 cut(s) 3, 113
BssT1I CCWWGG 2 cut(s) 84, 158
Bst2UI CCWGG 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 239
BstF5I GGATG 1 cut(s) 116
BstKTI GATC 2 cut(s) 6, 116
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 2 cut(s) 3, 113
BstMWI GCNNNNNNNGC 2 cut(s) 222, 239
BstNI CCWGG 1 cut(s) 13
BstSCI CCNGG 2 cut(s) 11, 137
BstSFI CTRYAG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 58
BsuRI GGCC 2 cut(s) 103, 225
BtsCI GGATG 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 155
CviJI RGCY 6 cut(s) 22, 40, 71, 103, 163, 225
CviKI_1 RGCY 6 cut(s) 22, 40, 71, 103, 163, 225
DpnI GATC 2 cut(s) 5, 115
DpnII GATC 2 cut(s) 3, 113
Eco130I CCWWGG 2 cut(s) 84, 158
Eco31I GGTCTC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 11
EcoT14I CCWWGG 2 cut(s) 84, 158
ErhI CCWWGG 2 cut(s) 84, 158
FaiI YATR 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 51, 72
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 2 cut(s) 51, 72
FspBI CTAG 1 cut(s) 45
GluI GCNGC 2 cut(s) 51, 72
HaeIII GGCC 2 cut(s) 103, 225
HapII CCGG 1 cut(s) 138
HpaII CCGG 1 cut(s) 138
Hpy188III TCNNGA 2 cut(s) 153, 197
HpyAV CCTTC 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 239
Kzo9I GATC 2 cut(s) 3, 113
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 5 cut(s) 25, 85, 128, 138, 151
Lsp1109I GCAGC 1 cut(s) 58
MaeI CTAG 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 269
MalI GATC 2 cut(s) 5, 115
MboI GATC 2 cut(s) 3, 113
MluCI AATT 1 cut(s) 205
MnlI CCTC 4 cut(s) 104, 177, 180, 215
MspA1I CMGCKG 2 cut(s) 22, 71
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 2 cut(s) 13, 139
MvaI CCWGG 1 cut(s) 13
MwoI GCNNNNNNNGC 2 cut(s) 222, 239
NciI CCSGG 1 cut(s) 139
NdeII GATC 2 cut(s) 3, 113
PkrI GCNGC 2 cut(s) 52, 73
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspPI GGNCC 1 cut(s) 155
PstI CTGCAG 1 cut(s) 186
PvuII CAGCTG 2 cut(s) 22, 71
SatI GCNGC 2 cut(s) 51, 72
Sau3AI GATC 2 cut(s) 3, 113
Sau96I GGNCC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 13, 139
SetI ASST 5 cut(s) 24, 42, 73, 90, 160
SfcI CTRYAG 1 cut(s) 182
SinI GGWCC 1 cut(s) 155
SpeI ACTAGT 1 cut(s) 44
Sse9I AATT 1 cut(s) 205
SsiI CCGC 1 cut(s) 51
SspI AATATT 1 cut(s) 254
SspMI CTAG 1 cut(s) 45
StyD4I CCNGG 2 cut(s) 11, 137
StyI CCWWGG 2 cut(s) 84, 158
TaqI TCGA 1 cut(s) 198
TasI AATT 1 cut(s) 205
TauI GCSGC 1 cut(s) 53
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 54, 199
VpaK11BI GGWCC 1 cut(s) 155
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.