Rh4AG057500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0019000
Physical Location & Seq
Reverse (-)
12131609 .. 12139696
8088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG057500.1

Sequence Viewer

Length: 291 bp
ATGAATTTCACTCAACTGACTGAAGTTGAGTTATGCGGAGCTGATGTGGGTGTGCCTTGGGATATGACTCTGCATGAGGGAGCACTAACGCGGAGCCGCGGAGGAGATATCAGCTCCAGTTTAGAAGCCTTACCTAAGCCTCACGAGCTCGCTGGCGATGTTGAAGACGAATGCGTGGCTGGTCGTCGTCATGGTGGTGATCATCTCTCTGCAAATCTCGTTGAACAATTTGAGAACTGGCGAATCTCATTGAGCTTGGATCGACAGCGGTTTCGCGGTGTTGGCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.55

Weight (kDa)

4.89

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019000)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0395241
rosa_laevigata RLG00000009639
rosa_samantha Rh1DG445900 Rh1DG446000 Rh4AG057500 Rh4AG057600 Rh4BG056400 Rh6BG208600
rosa_wichuraiana Rw4G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 284
AccII CGCG 3 cut(s) 91, 99, 276
AciI CCGC 6 cut(s) 36, 91, 97, 99, 268, 276
AclWI GGATC 1 cut(s) 267
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 42
AgsI TTSAA 2 cut(s) 164, 224
AluBI AGCT 4 cut(s) 41, 114, 148, 255
AluI AGCT 4 cut(s) 41, 114, 148, 255
Alw21I GWGCWC 2 cut(s) 85, 150
AlwI GGATC 1 cut(s) 267
ApoI RAATTY 1 cut(s) 4
ArsI GACNNNNNNTTYG 2 cut(s) 255, 287
AsuHPI GGTGA 1 cut(s) 209
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 150
BauI CACGAG 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 171
Bbv12I GWGCWC 2 cut(s) 85, 150
BclI TGATCA 1 cut(s) 199
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 95, 286
BpiI GAAGAC 1 cut(s) 171
BpmI CTGGAG 1 cut(s) 100
Bpu10I CCTNAGC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 56, 97
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bse1I ACTGG 2 cut(s) 117, 242
BseDI CCNNGG 2 cut(s) 56, 97
BseNI ACTGG 2 cut(s) 117, 242
BseRI GAGGAG 1 cut(s) 117
Bsh1236I CGCG 3 cut(s) 91, 99, 276
BshNI GGYRCC 1 cut(s) 284
BsiHKAI GWGCWC 2 cut(s) 85, 150
BsmI GAATGC 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 85, 150
Bsp143I GATC 2 cut(s) 199, 259
BspACI CCGC 6 cut(s) 36, 91, 97, 99, 268, 276
BspFNI CGCG 3 cut(s) 91, 99, 276
BspLI GGNNCC 2 cut(s) 95, 286
BspPI GGATC 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 284
BsrI ACTGG 2 cut(s) 117, 242
BssECI CCNNGG 2 cut(s) 56, 97
BssMI GATC 2 cut(s) 199, 259
BssSI CACGAG 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 56
Bst2BI CACGAG 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 150, 154
BstDEI CTNAG 1 cut(s) 135
BstDSI CCRYGG 1 cut(s) 97
BstFNI CGCG 3 cut(s) 91, 99, 276
BstKTI GATC 2 cut(s) 202, 262
BstMBI GATC 2 cut(s) 199, 259
BstMWI GCNNNNNNNGC 2 cut(s) 145, 282
BstUI CGCG 3 cut(s) 91, 99, 276
BstV2I GAAGAC 1 cut(s) 171
BtgI CCRYGG 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 171
Cac8I GCNNGC 2 cut(s) 150, 154
Cfr42I CCGCGG 1 cut(s) 100
CviAII CATG 2 cut(s) 74, 191
CviJI RGCY 8 cut(s) 41, 96, 114, 128, 139, 148, 179, 255
CviKI_1 RGCY 8 cut(s) 41, 96, 114, 128, 139, 148, 179, 255
DdeI CTNAG 1 cut(s) 135
DpnI GATC 2 cut(s) 201, 261
DpnII GATC 2 cut(s) 199, 259
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 150
Eco32I GATATC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 148
EcoRV GATATC 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 2 cut(s) 77, 194
FaiI YATR 4 cut(s) 34, 65, 75, 192
FatI CATG 2 cut(s) 73, 190
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 97
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 97
GsuI CTGGAG 1 cut(s) 100
Hin1II CATG 2 cut(s) 77, 194
HinfI GANTC 2 cut(s) 67, 243
HphI GGTGA 1 cut(s) 209
Hpy188III TCNNGA 1 cut(s) 143
Hpy99I CGWCG 1 cut(s) 189
HpyCH4V TGCA 2 cut(s) 73, 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 282
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 2 cut(s) 77, 194
Ksp22I TGATCA 1 cut(s) 199
KspI CCGCGG 1 cut(s) 100
Kzo9I GATC 2 cut(s) 199, 259
LmnI GCTCC 4 cut(s) 38, 80, 93, 119
LpnPI CCDG 4 cut(s) 130, 138, 165, 223
MalI GATC 2 cut(s) 201, 261
MboI GATC 2 cut(s) 199, 259
MboII GAAGA 1 cut(s) 176
MhlI GDGCHC 2 cut(s) 85, 150
MluCI AATT 2 cut(s) 4, 227
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 3 cut(s) 70, 95, 150
MslI CAYNNNNRTG 1 cut(s) 195
MspA1I CMGCKG 2 cut(s) 99, 268
Mva1269I GAATGC 1 cut(s) 176
MvnI CGCG 3 cut(s) 91, 99, 276
MwoI GCNNNNNNNGC 2 cut(s) 145, 282
NdeII GATC 2 cut(s) 199, 259
NlaIII CATG 2 cut(s) 77, 194
NlaIV GGNNCC 2 cut(s) 95, 286
PctI GAATGC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 243
PkrI GCNGC 1 cut(s) 98
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 95, 286
RseI CAYNNNNRTG 1 cut(s) 195
SacI GAGCTC 1 cut(s) 150
SacII CCGCGG 1 cut(s) 100
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 2 cut(s) 199, 259
SchI GAGTC 1 cut(s) 61
SduI GDGCHC 2 cut(s) 85, 150
SetI ASST 6 cut(s) 43, 116, 136, 150, 257, 290
Sfr303I CCGCGG 1 cut(s) 100
SgrBI CCGCGG 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 195
Sse9I AATT 2 cut(s) 4, 227
SsiI CCGC 6 cut(s) 36, 91, 97, 99, 268, 276
SstI GAGCTC 1 cut(s) 150
StyI CCWWGG 1 cut(s) 56
TaqI TCGA 1 cut(s) 262
TasI AATT 2 cut(s) 4, 227
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 243
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.