Rh6BG208600

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0019000
Physical Location & Seq
Reverse (-)
39285288 .. 39290196
4909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG208600.1

Sequence Viewer

Length: 423 bp
ATGGCCACCAAACTCACCCGTTTCCTCATTTGGTCTCAACTCTGCTCCAGAGCCCAGCCGATGACGGACTTGTCAGATGACGGTATTCTAAAGACGCGCTGTCGGACGAAAGGGAGATCTCACATAGACTGTAATTTTGAGAGTGAAGAATCAATAATGGAGGTGGAGGAAAATTTTGGTTTCATATCTATAAGAGATAGTCATGAGGATCTAATGGATTCCTTGTACCTACAAGTCAAAATTGTGAGCCAGACTCTTATTTTTGTCACTCAATCACGAAGTTGGTCCTTTTTAGAATGCCTTGGACTACTATTACTCAGTGCTGTTGCCATCGGCCAGCTGGACCTCCCCTATAGTATCGTCACCGCAGTAGAGTTTAACCACCAAGTTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

140

Amino Acids

16.04

Weight (kDa)

4.94

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019000)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0395241
rosa_laevigata RLG00000009639
rosa_samantha Rh1DG445900 Rh1DG446000 Rh4AG057500 Rh4AG057600 Rh4BG056400 Rh6BG208600
rosa_wichuraiana Rw4G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 70
AccII CGCG 1 cut(s) 97
AciI CCGC 1 cut(s) 366
AclWI GGATC 1 cut(s) 216
AcoI YGGCCR 2 cut(s) 3, 334
AcsI RAATTY 1 cut(s) 172
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 391
AhdI GACNNNNNGTC 1 cut(s) 99
AluBI AGCT 1 cut(s) 340
AluI AGCT 1 cut(s) 340
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 1 cut(s) 216
AoxI GGCC 2 cut(s) 3, 334
ApoI RAATTY 1 cut(s) 172
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 285, 343
AsuHPI GGTGA 2 cut(s) 7, 355
AvaII GGWCC 2 cut(s) 285, 343
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 55
BccI CCATC 2 cut(s) 338, 389
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 1 cut(s) 421
BfmI CTRYAG 1 cut(s) 352
BglII AGATCT 1 cut(s) 116
Bme18I GGWCC 2 cut(s) 285, 343
BmeRI GACNNNNNGTC 1 cut(s) 99
BmgT120I GGNCC 2 cut(s) 285, 343
BmiI GGNNCC 1 cut(s) 410
BplI GAGNNNNNCTC 2 cut(s) 238, 270
BpmI CTGGAG 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 331
BseYI CCCAGC 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 97
BshFI GGCC 2 cut(s) 5, 336
BslI CCNNNNNNNGG 1 cut(s) 391
BsmAI GTCTC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 2 cut(s) 5, 336
Bso31I GGTCTC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 2 cut(s) 116, 208
BspACI CCGC 1 cut(s) 366
BspANI GGCC 2 cut(s) 5, 336
BspCNI CTCAG 1 cut(s) 330
BspFNI CGCG 1 cut(s) 97
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 410
BspPI GGATC 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 2 cut(s) 116, 208
BssT1I CCWWGG 1 cut(s) 301
Bst4CI ACNGT 2 cut(s) 83, 131
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 1 cut(s) 317
BstF5I GGATG 1 cut(s) 400
BstFNI CGCG 1 cut(s) 97
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 2 cut(s) 119, 211
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 2 cut(s) 116, 208
BstSFI CTRYAG 1 cut(s) 352
BstUI CGCG 1 cut(s) 97
BstX2I RGATCY 2 cut(s) 116, 208
BstYI RGATCY 2 cut(s) 116, 208
BsuRI GGCC 2 cut(s) 5, 336
BtsCI GGATG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 338
CciI TCATGA 1 cut(s) 202
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 285, 343
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 226
CviAII CATG 1 cut(s) 203
CviJI RGCY 6 cut(s) 5, 53, 58, 249, 336, 340
CviKI_1 RGCY 6 cut(s) 5, 53, 58, 249, 336, 340
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 317
DpnI GATC 2 cut(s) 118, 210
DpnII GATC 2 cut(s) 116, 208
DrdI GACNNNNNNGTC 1 cut(s) 70
DriI GACNNNNNGTC 1 cut(s) 99
DseDI GACNNNNNNGTC 1 cut(s) 70
EaeI YGGCCR 2 cut(s) 3, 334
Eam1105I GACNNNNNGTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 55
Eco31I GGTCTC 1 cut(s) 39
Eco47I GGWCC 2 cut(s) 285, 343
EcoT14I CCWWGG 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 1 cut(s) 206
FaiI YATR 5 cut(s) 125, 185, 191, 204, 354
FatI CATG 1 cut(s) 202
FokI GGATG 1 cut(s) 407
FriOI GRGCYC 1 cut(s) 55
FspBI CTAG 1 cut(s) 421
GlaI GCGC 1 cut(s) 98
GsaI CCCAGC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 31
HaeIII GGCC 2 cut(s) 5, 336
HgaI GACGC 1 cut(s) 103
HhaI GCGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 206
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 3 cut(s) 149, 218, 253
HphI GGTGA 2 cut(s) 7, 355
Hpy188I TCNGA 2 cut(s) 76, 105
Hpy188III TCNNGA 4 cut(s) 48, 203, 276, 392
HpyCH4III ACNGT 2 cut(s) 83, 131
HpyF3I CTNAG 1 cut(s) 317
Hsp92II CATG 1 cut(s) 206
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 2 cut(s) 116, 208
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 5 cut(s) 61, 68, 263, 326, 350
MaeI CTAG 1 cut(s) 421
MaeIII GTNAC 2 cut(s) 265, 361
MalI GATC 2 cut(s) 118, 210
MboI GATC 2 cut(s) 116, 208
MboII GAAGA 1 cut(s) 158
MflI RGATCY 2 cut(s) 116, 208
MhlI GDGCHC 1 cut(s) 55
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 133, 172, 240
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 247
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 6 cut(s) 35, 154, 160, 199, 356, 422
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 378
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 340
Mva1269I GAATGC 1 cut(s) 302
MvnI CGCG 1 cut(s) 97
NdeII GATC 2 cut(s) 116, 208
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 410
NmuCI GTSAC 2 cut(s) 265, 361
PagI TCATGA 1 cut(s) 202
PctI GAATGC 1 cut(s) 302
PfeI GAWTC 2 cut(s) 149, 218
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 410
PspPI GGNCC 2 cut(s) 285, 343
PsuI RGATCY 2 cut(s) 116, 208
PvuII CAGCTG 1 cut(s) 340
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 378
Sau3AI GATC 2 cut(s) 116, 208
Sau96I GGNCC 2 cut(s) 285, 343
SchI GAGTC 1 cut(s) 247
SduI GDGCHC 1 cut(s) 55
SetI ASST 4 cut(s) 165, 231, 342, 348
SfcI CTRYAG 1 cut(s) 352
SinI GGWCC 2 cut(s) 285, 343
Sse9I AATT 3 cut(s) 133, 172, 240
SsiI CCGC 1 cut(s) 366
SspMI CTAG 1 cut(s) 421
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 2 cut(s) 83, 131
TasI AATT 3 cut(s) 133, 172, 240
TfiI GAWTC 2 cut(s) 149, 218
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 2 cut(s) 265, 361
Tsp45I GTSAC 2 cut(s) 265, 361
TspDTI ATGAA 1 cut(s) 172
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 1 cut(s) 325
VpaK11BI GGWCC 2 cut(s) 285, 343
XapI RAATTY 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 2 cut(s) 337, 392
XspI CTAG 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.