Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017437

Physical Location & Seq

Genomic Coordinates Forward (+)

20881611 .. 20882686

Gene Structure 1076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37415

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGTGACTACTTCTCTTGATAACACATGGTGTTTTTGTGATATTTCCAATGGAGAATGTCTGAGACAGGATGATTCAGTGTCTCAAGGCTATACATCTGCGGCCTTTCATCCAGATGGTATCTTACTCGAAGTAGGCACCTCGGATGGTCTTGTCAAAATTTGGGATGTAAAAAGTCAGACTGCCGCTAGTGATGGTGTTAGATGTTGGGATAAGCGCAACTTAAGTAATTGCACATTGAGTGATTTTGGTACTCGAACGAGCTGTGTTGAATTCGACTTCAGTGGAAGTTACCTTGCAGCTGCATGCTTTTATAAAACGAGGTCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022607 GO:0022613 GO:0022618 GO:0030312 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0034622 GO:0034641 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0065003 GO:0070013 GO:0070534 GO:0070647 GO:0071006 GO:0071012 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080008 GO:0090304 GO:0098542 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko04120 map03040 map04120

Pfam Domains

Protein Families

Prp19 U-box WD40

Protein Analysis

110

Amino Acids

12.05

Weight (kDa)

4.55

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	1 - 63	6.6e-18	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	1 - 61	7.1e-07	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	1 - 103	9e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	2 - 62	4.3e-06	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	9 - 101	9e-06	WDR3 first beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017437)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0402341 RchiOBHm_Chr4g0402351
rosa_laevigata	RLG00000009101
rosa_samantha	Rh4AG112100 Rh4BG104700 Rh4CG118900 Rh4DG101700 Rh4DG101800 Rh4DG101900 Rh4DG102000 Rh4DG102100 Rh4DG102500 Rh7DG037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	137
AciI	CCGC	2 cut(s)	101, 186
AcsI	RAATTY	2 cut(s)	159, 272
AcuI	CTGAAG	1 cut(s)	265
AdeI	CACNNNGTG	1 cut(s)	30
AfaI	GTAC	1 cut(s)	253
AflII	CTTAAG	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	272
AluBI	AGCT	2 cut(s)	264, 302
AluI	AGCT	2 cut(s)	264, 302
Alw26I	GTCTC	2 cut(s)	58, 87
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	299, 302
ApoI	RAATTY	2 cut(s)	159, 272
AspLEI	GCGC	1 cut(s)	219
AsuHPI	GGTGA	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	289, 311
BccI	CCATC	3 cut(s)	110, 140, 188
BcoDI	GTCTC	2 cut(s)	58, 87
BfaI	CTAG	1 cut(s)	189
BfrI	CTTAAG	1 cut(s)	223
BisI	GCNGC	4 cut(s)	102, 186, 300, 303
BlsI	GCNGC	4 cut(s)	103, 187, 301, 304
BmiI	GGNNCC	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	4 cut(s)	76, 109, 151, 172
BseMII	CTCAG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	289, 311
BshFI	GGCC	1 cut(s)	104
BshNI	GGYRCC	1 cut(s)	137
BsmAI	GTCTC	2 cut(s)	58, 87
BsnI	GGCC	1 cut(s)	104
BspACI	CCGC	2 cut(s)	101, 186
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	137
BspTI	CTTAAG	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	141
BstAFI	CTTAAG	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	1 cut(s)	62
BstF5I	GGATG	4 cut(s)	76, 109, 151, 172
BstHHI	GCGC	1 cut(s)	219
BstMAI	GTCTC	2 cut(s)	58, 87
BstNSI	RCATGY	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	289, 311
BsuRI	GGCC	1 cut(s)	104
BtsCI	GGATG	4 cut(s)	76, 109, 151, 172
BtsIMutI	CAGTG	2 cut(s)	84, 289
Cac8I	GCNNGC	1 cut(s)	307
CfoI	GCGC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	2 cut(s)	27, 306
CviJI	RGCY	4 cut(s)	90, 104, 264, 302
CviKI_1	RGCY	4 cut(s)	90, 104, 264, 302
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	1 cut(s)	62
DraIII	CACNNNGTG	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	272
FaeI	CATG	2 cut(s)	30, 309
FaiI	YATR	4 cut(s)	28, 93, 307, 315
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FatI	CATG	2 cut(s)	26, 305
Fnu4HI	GCNGC	4 cut(s)	102, 186, 300, 303
FokI	GGATG	4 cut(s)	83, 96, 158, 179
Fsp4HI	GCNGC	4 cut(s)	102, 186, 300, 303
FspBI	CTAG	1 cut(s)	189
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	4 cut(s)	102, 186, 300, 303
HaeIII	GGCC	1 cut(s)	104
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	30, 309
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	74
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	63, 145, 180
Hpy188III	TCNNGA	2 cut(s)	17, 113
HpyCH4V	TGCA	3 cut(s)	234, 299, 305
HpyF3I	CTNAG	1 cut(s)	62
Hsp92II	CATG	2 cut(s)	30, 309
HspAI	GCGC	1 cut(s)	217
LpnPI	CCDG	2 cut(s)	53, 126
Lsp1109I	GCAGC	2 cut(s)	289, 311
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	4, 290
MluCI	AATT	3 cut(s)	159, 229, 272
MnlI	CCTC	2 cut(s)	151, 315
MseI	TTAA	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	223
NlaIII	CATG	2 cut(s)	30, 309
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	4
NspI	RCATGY	1 cut(s)	309
PaeI	GCATGC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	4 cut(s)	103, 187, 301, 304
PsiI	TTATAA	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
RseI	CAYNNNNRTG	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	4 cut(s)	102, 186, 300, 303
SetI	ASST	5 cut(s)	143, 266, 297, 304, 326
SmiMI	CAYNNNNRTG	1 cut(s)	114
SmlI	CTYRAG	2 cut(s)	84, 223
SmoI	CTYRAG	2 cut(s)	84, 223
SphI	GCATGC	1 cut(s)	309
Sse9I	AATT	3 cut(s)	159, 229, 272
SsiI	CCGC	2 cut(s)	101, 186
SspMI	CTAG	1 cut(s)	189
TaqI	TCGA	3 cut(s)	129, 256, 276
TasI	AATT	3 cut(s)	159, 229, 272
TauI	GCSGC	2 cut(s)	104, 188
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	2 cut(s)	84, 289
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	2 cut(s)	299, 302
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	84, 289
Vha464I	CTTAAG	1 cut(s)	223
XapI	RAATTY	2 cut(s)	159, 272
XceI	RCATGY	1 cut(s)	309
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.