Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0017437

Physical Location & Seq

Genomic Coordinates Forward (+)

18020984 .. 18028725

Gene Structure 7742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG104700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTCTCAAAATTTTCAAGTGCGAGCCGTTACTGTACATCCCACAAATAACTACATCGTGATTGCTTCTCTTGATAACACATGGTGTTTTTGTGATATTTCCAATGGAGAATGTCTGAGACAGGTCAAGGATGATTCAGTGTCTCAAGGTTATACATCTGCGGCCTTTCATCCAGATGGTGTCTTACTCGGAGTAGGCACCCCGGATGGCCTTGTCAAAATTTGGGATGTAAAAAGTCAAACTGCCGCTAGTGATGGTGTTAGATGTTGGGATAAGCGCAGCTTAAGTAATTGCATATGGGGTGATTTTGGTACACGAACGAGTTGTGTTGAATTCGACTTTAGTGGAAGTTACCTTGCAGCTGCAGGCTCCTATAAAACGAGAGTCTTCCGAGCTTCTAGTCTGGAGTCAAAATGGAAGATCATCAATAATTTCAGAACTTCCCGAATAGGTGAACAAACTAGCGTAAAATTTGGCCCAGATGCCCAATATATTGTAGTAGGATCAACGGATGGAAAAGAAAACCTCTGCATTTACTGCGAACATATCATCTTTGAGGAGTATGACTATGATCGTCCCACCCTTGCTGATTGTGCTGATGTTATGGACATGTTAGATTGCTCTTATGCTGAGGTTATGAAGACAGTAGATTGCTACAACACAGCTACACCGGAGAAACCAGTAGAAACAAGAGCCATTATAAATGATATATCATCCCAGCAGCAAATGAGTGTCCCGGCACAAAGGGATCTTTATAATGAAAATGAGTTAAAAGAATCTAAGACGAACAACCTTCCTGAACATGATGTTGAGGCTGAGACATCTGAGAAGTCTGCGGATTCGGATGGTGAGTCATTTGAGAAGTTTGAGGAATTGGAGGATGAGGTGTCTGAGAAGTCTTTTGAAGCAGAAGATGAGACCTCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022607 GO:0022613 GO:0022618 GO:0030312 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0034622 GO:0034641 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0065003 GO:0070013 GO:0070534 GO:0070647 GO:0071006 GO:0071012 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080008 GO:0090304 GO:0098542 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko04120 map03040 map04120

Pfam Domains

Protein Families

Prp19 U-box WD40

Protein Analysis

309

Amino Acids

34.59

Weight (kDa)

4.41

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_EML_2	PF23414	4 - 80	3.7e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	5 - 173	9.6e-11	WDHD1 first WD40 domain
WD40_Prp19	PF24814	6 - 83	4.9e-27	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	6 - 172	1.3e-12	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	7 - 81	6.7e-08	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	16 - 172	5.6e-06	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	81 - 171	3.4e-11	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017437)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0402341 RchiOBHm_Chr4g0402351
rosa_laevigata	RLG00000009101
rosa_samantha	Rh4AG112100 Rh4BG104700 Rh4CG118900 Rh4DG101700 Rh4DG101800 Rh4DG101900 Rh4DG102000 Rh4DG102100 Rh4DG102500 Rh7DG037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	701, 756
AccB1I	GGYRCC	1 cut(s)	197
AciI	CCGC	3 cut(s)	161, 246, 836
AclWI	GGATC	2 cut(s)	511, 756
AcsI	RAATTY	4 cut(s)	10, 219, 332, 470
AdeI	CACNNNGTG	1 cut(s)	84
AfaI	GTAC	2 cut(s)	36, 313
AflII	CTTAAG	1 cut(s)	283
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	3 cut(s)	17, 332, 905
AluBI	AGCT	4 cut(s)	282, 362, 395, 665
AluI	AGCT	4 cut(s)	282, 362, 395, 665
Alw26I	GTCTC	5 cut(s)	9, 112, 147, 812, 911
AlwI	GGATC	2 cut(s)	511, 756
AoxI	GGCC	3 cut(s)	162, 208, 475
ApeKI	GCWGC	4 cut(s)	279, 359, 362, 721
ApoI	RAATTY	4 cut(s)	10, 219, 332, 470
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	476
AsuC2I	CCSGG	2 cut(s)	203, 737
AsuHPI	GGTGA	3 cut(s)	314, 464, 860
BanI	GGYRCC	1 cut(s)	197
BbsI	GAAGAC	2 cut(s)	379, 647
BbvCI	CCTCAGC	1 cut(s)	630
BbvI	GCAGC	4 cut(s)	291, 349, 371, 733
BccI	CCATC	5 cut(s)	170, 200, 248, 506, 839
BceAI	ACGGC	1 cut(s)	11
BcnI	CCSGG	2 cut(s)	203, 737
BcoDI	GTCTC	5 cut(s)	9, 112, 147, 812, 911
BfaI	CTAG	3 cut(s)	249, 399, 462
BfmI	CTRYAG	1 cut(s)	363
BfrI	CTTAAG	1 cut(s)	283
BisI	GCNGC	6 cut(s)	162, 246, 280, 360, 363, 722
BlsI	GCNGC	6 cut(s)	163, 247, 281, 361, 364, 723
Bme1390I	CCNGG	2 cut(s)	203, 737
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	2 cut(s)	199, 370
BmrFI	CCNGG	2 cut(s)	203, 737
BmsI	GCATC	1 cut(s)	472
BpiI	GAAGAC	2 cut(s)	379, 647
BpmI	CTGGAG	1 cut(s)	425
Bpu10I	CCTNAGC	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	129
BpuMI	CCSGG	2 cut(s)	203, 737
BsaI	GGTCTC	1 cut(s)	911
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	670
Bse1I	ACTGG	1 cut(s)	680
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	9 cut(s)	37, 136, 169, 211, 232, 517, 713, 850, 886
BseMII	CTCAG	6 cut(s)	107, 621, 807, 816, 882, 915
BseNI	ACTGG	1 cut(s)	680
BseRI	GAGGAG	1 cut(s)	572
BseXI	GCAGC	4 cut(s)	291, 349, 371, 733
BseYI	CCCAGC	1 cut(s)	717
BshFI	GGCC	3 cut(s)	164, 210, 477
BshNI	GGYRCC	1 cut(s)	197
BsiSI	CCGG	3 cut(s)	203, 671, 737
BslFI	GGGAC	2 cut(s)	561, 719
BsmAI	GTCTC	5 cut(s)	9, 112, 147, 812, 911
BsmFI	GGGAC	2 cut(s)	561, 719
BsnI	GGCC	3 cut(s)	164, 210, 477
Bso31I	GGTCTC	1 cut(s)	911
Bsp1407I	TGTACA	1 cut(s)	34
Bsp143I	GATC	4 cut(s)	420, 503, 571, 748
BspACI	CCGC	3 cut(s)	161, 246, 836
BspANI	GGCC	3 cut(s)	164, 210, 477
BspCNI	CTCAG	6 cut(s)	108, 622, 808, 817, 883, 916
BspLI	GGNNCC	2 cut(s)	199, 370
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	2 cut(s)	511, 756
BspT107I	GGYRCC	1 cut(s)	197
BspTI	CTTAAG	1 cut(s)	283
BspTNI	GGTCTC	1 cut(s)	911
BsrGI	TGTACA	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	680
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	4 cut(s)	420, 503, 571, 748
Bst4CI	ACNGT	2 cut(s)	34, 646
BstAFI	CTTAAG	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	537
BstAUI	TGTACA	1 cut(s)	34
BstC8I	GCNNGC	2 cut(s)	24, 367
BstDEI	CTNAG	7 cut(s)	116, 630, 780, 816, 825, 891, 924
BstF5I	GGATG	9 cut(s)	37, 136, 169, 211, 232, 517, 713, 850, 886
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	4 cut(s)	423, 506, 574, 751
BstMAI	GTCTC	5 cut(s)	9, 112, 147, 812, 911
BstMBI	GATC	4 cut(s)	420, 503, 571, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	537, 593
BstNSI	RCATGY	1 cut(s)	613
BstSCI	CCNGG	2 cut(s)	201, 735
BstSFI	CTRYAG	1 cut(s)	363
BstV1I	GCAGC	4 cut(s)	291, 349, 371, 733
BstV2I	GAAGAC	2 cut(s)	379, 647
BstX2I	RGATCY	1 cut(s)	748
BstYI	RGATCY	1 cut(s)	748
BsuRI	GGCC	3 cut(s)	164, 210, 477
BtsCI	GGATG	9 cut(s)	37, 136, 169, 211, 232, 517, 713, 850, 886
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	24, 367
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	476
Csp6I	GTAC	2 cut(s)	35, 312
CviAII	CATG	3 cut(s)	81, 610, 803
CviQI	GTAC	2 cut(s)	35, 312
DdeI	CTNAG	7 cut(s)	116, 630, 780, 816, 825, 891, 924
DpnI	GATC	4 cut(s)	422, 505, 573, 750
DpnII	GATC	4 cut(s)	420, 503, 571, 748
DraIII	CACNNNGTG	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	911
EcoRI	GAATTC	1 cut(s)	332
FaeI	CATG	3 cut(s)	84, 613, 806
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	2 cut(s)	561, 719
FatI	CATG	3 cut(s)	80, 609, 802
FauNDI	CATATG	1 cut(s)	296
Fnu4HI	GCNGC	6 cut(s)	162, 246, 280, 360, 363, 722
FokI	GGATG	9 cut(s)	24, 143, 156, 218, 239, 524, 700, 857, 893
Fsp4HI	GCNGC	6 cut(s)	162, 246, 280, 360, 363, 722
FspBI	CTAG	3 cut(s)	249, 399, 462
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	6 cut(s)	162, 246, 280, 360, 363, 722
GsaI	CCCAGC	1 cut(s)	721
GsuI	CTGGAG	1 cut(s)	425
HaeIII	GGCC	3 cut(s)	164, 210, 477
HapII	CCGG	3 cut(s)	203, 671, 737
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	84, 613, 806
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HinfI	GANTC	6 cut(s)	134, 384, 407, 776, 839, 851
HpaII	CCGG	3 cut(s)	203, 671, 737
HphI	GGTGA	3 cut(s)	314, 464, 860
Hpy166II	GTNNAC	2 cut(s)	314, 455
Hpy188I	TCNGA	8 cut(s)	117, 191, 392, 437, 826, 844, 892, 925
Hpy188III	TCNNGA	6 cut(s)	58, 71, 173, 404, 444, 797
Hpy8I	GTNNAC	2 cut(s)	314, 455
HpyAV	CCTTC	1 cut(s)	803
HpyCH4III	ACNGT	2 cut(s)	34, 646
HpyCH4V	TGCA	4 cut(s)	294, 359, 365, 531
HpyF10VI	GCNNNNNNNGC	2 cut(s)	537, 593
HpyF3I	CTNAG	7 cut(s)	116, 630, 780, 816, 825, 891, 924
Hsp92II	CATG	3 cut(s)	84, 613, 806
HspAI	GCGC	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	420, 503, 571, 748
LmnI	GCTCC	1 cut(s)	374
Lsp1109I	GCAGC	4 cut(s)	291, 349, 371, 733
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	3 cut(s)	249, 399, 462
MaeIII	GTNAC	2 cut(s)	28, 350
MalI	GATC	4 cut(s)	422, 505, 573, 750
MboI	GATC	4 cut(s)	420, 503, 571, 748
MboII	GAAGA	4 cut(s)	379, 430, 652, 923
MflI	RGATCY	1 cut(s)	748
MluCI	AATT	7 cut(s)	10, 219, 289, 332, 430, 470, 872
MlyI	GAGTC	3 cut(s)	393, 416, 860
MnlI	CCTC	7 cut(s)	536, 550, 625, 805, 862, 871, 877
MseI	TTAA	2 cut(s)	284, 770
MslI	CAYNNNNRTG	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	362
MspCI	CTTAAG	1 cut(s)	283
MspI	CCGG	3 cut(s)	203, 671, 737
MspR9I	CCNGG	2 cut(s)	203, 737
MwoI	GCNNNNNNNGC	2 cut(s)	537, 593
NciI	CCSGG	2 cut(s)	203, 737
NdeI	CATATG	1 cut(s)	296
NdeII	GATC	4 cut(s)	420, 503, 571, 748
NlaIII	CATG	3 cut(s)	84, 613, 806
NlaIV	GGNNCC	2 cut(s)	199, 370
NspI	RCATGY	1 cut(s)	613
PciI	ACATGT	1 cut(s)	609
PfeI	GAWTC	3 cut(s)	134, 776, 839
PkrI	GCNGC	6 cut(s)	163, 247, 281, 361, 364, 723
PleI	GAGTC	3 cut(s)	392, 415, 859
PpsI	GAGTC	3 cut(s)	392, 415, 859
PscI	ACATGT	1 cut(s)	609
PsiI	TTATAA	2 cut(s)	701, 756
PspFI	CCCAGC	1 cut(s)	717
PspN4I	GGNNCC	2 cut(s)	199, 370
PspPI	GGNCC	1 cut(s)	476
PstI	CTGCAG	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	748
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	2 cut(s)	36, 313
RsaNI	GTAC	2 cut(s)	35, 312
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	284, 770
SatI	GCNGC	6 cut(s)	162, 246, 280, 360, 363, 722
Sau3AI	GATC	4 cut(s)	420, 503, 571, 748
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	3 cut(s)	393, 416, 860
ScrFI	CCNGG	2 cut(s)	203, 737
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	2 cut(s)	144, 283
SmoI	CTYRAG	2 cut(s)	144, 283
Sse9I	AATT	7 cut(s)	10, 219, 289, 332, 430, 470, 872
SsiI	CCGC	3 cut(s)	161, 246, 836
SspMI	CTAG	3 cut(s)	249, 399, 462
StyD4I	CCNGG	2 cut(s)	201, 735
TaaI	ACNGT	2 cut(s)	34, 646
TaqI	TCGA	1 cut(s)	336
TasI	AATT	7 cut(s)	10, 219, 289, 332, 430, 470, 872
TatI	WGTACW	1 cut(s)	34
TauI	GCSGC	2 cut(s)	164, 248
TfiI	GAWTC	3 cut(s)	134, 776, 839
Tru1I	TTAA	2 cut(s)	284, 770
Tru9I	TTAA	2 cut(s)	284, 770
TscAI	CASTG	1 cut(s)	144
TseI	GCWGC	4 cut(s)	279, 359, 362, 721
TspDTI	ATGAA	3 cut(s)	158, 653, 774
TspGWI	ACGGA	1 cut(s)	524
TspRI	CASTG	1 cut(s)	144
Vha464I	CTTAAG	1 cut(s)	283
XapI	RAATTY	4 cut(s)	10, 219, 332, 470
XceI	RCATGY	1 cut(s)	613
XspI	CTAG	3 cut(s)	249, 399, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.