Rh4DG101800

U-box domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
15562757 .. 15567715
4959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG101800.1

Sequence Viewer

Length: 1218 bp
ATGCTATTGACTCCTCATTTCCTTCAAAGGTTCAGCAAAGGAATAGTATCTATCGACAATCATCCTCATAAGGATATCATTGCAACTGGTGGGATTGATGAAAAGGTTGTGATCTTTGATTTAGCGTCAAACAAAGTCCTATCTACTCTTCATGGTCATTCAGACCGGGTTACTAGTGTTAGATTTGTGAGTCGTGATGATCTGTTCGTAACTGGGTCGGCTGACAAGACTGTTTGCATATGGAAAGGCTCTGATGATGGGAAGTATAAGTGCAACCTCACTTTGGAGAATCATACAGCTGAGGTGCGAGCTGTTACTGTACATCCCACAAATAACTACTTCGTGACTGCTTCTCTTGATAACACATGGTGTTTTTGTGATATTTCCAATGGAGAATGTCTGAGACAGGTCAAGGATGATTCAGTGTCTCAAGGTTATACATCTGCGGCCTTTCATCCAGATGGTGTCTTACTTGGAGTAGGCACCTCGGATCTCAAAATTTGGGATGTAAAAAGTCAGAGGGTGGTGAAAAGTCTTTGTCAACATGTTGGGGAAGTAACTTCCATCTCCTTCTCTGAAAATGGCAACTTTTTTGCGACTGCCGCTAGTGATGGTGTTAGATTGTGGGATAAGCGCAACTTAAGGAAATTCATATGGAGTGATCTTGGTACACGAACAAGCTGTGTTGAATTCGACTTCAGTGGAAGTTACCTTGCAGCTGCAGGCTCCTATAATACGAGAGTCTTCCGAGCTACTAGACGGGAGTCAAAATGGGAGACCATCAAAACTTTCACTTCCCTGACAGGTGAACAAACTAGCGTCAAATTTGGCCCAGATGCCCGATATATTGCAGTAGGATCAACAGACGGAGAAGAAAACCTCTGCACTTACTGTGAACATACCATCGAATATGACCGTGGTAGCCATCCCGCTGCTGATGTTGGGGGTGTGATGGTTTCCATCTTTGAGAGGGAGTGGGCAGAAGATATGGAGTTGGACTATGATAGTGACTTCTCAGGGGAAGAATCGGAGTTGGACTATGATAGTGACTTCTCAGGGGAAGAATCGGAGTTGGTATATGTCACGAAAAAGAAGAAAAAAAATGATGATGACACGGAGATGGAAAAAGTTGGGACCAAAAAGGAGAAAGATCTCGTAGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAATATGAGACGGATTTGCTTTACAATTGA

Protein Analysis

405

Amino Acids

45.38

Weight (kDa)

4.78

Isoelectric Point (pI)

18.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 8 - 162 3.5e-24 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 8 - 122 9.5e-11 WDR36/Utp21 first beta-propeller
WD40_WDHD1_1st PF24817 8 - 89 6.6e-10 WDHD1 first WD40 domain
WDR55 PF24796 11 - 80 2.8e-06 WDR55
Beta-prop_DCAF12 PF23760 12 - 111 2.1e-07 DDB1- and CUL4-associated factor 12 beta propeller
WD40_Prp19 PF24814 12 - 289 2e-85 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 12 - 141 4.1e-14 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 12 - 163 7.1e-20 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 12 - 64 8.3e-06 THOC3 beta-propeller domain
Beta-prop_EML PF23409 13 - 209 1.4e-09 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_2nd PF25172 16 - 122 5.1e-12 WDR3 second beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 21 - 82 9.9e-08 MABP1/WDR62 second WD40 domain
WD40_Gbeta PF25391 26 - 165 1.1e-10 G protein beta WD-40 repeat protein
WD40 PF00400 45 - 81 5.5e-09 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 46 - 143 2.5e-08 CAF1B/HIR1 beta-propeller domain
EIF3I PF24805 49 - 142 4.9e-10 EIF3I
Beta-prop_THOC3 PF25174 53 - 290 3.6e-35 THOC3 beta-propeller domain
WDR55 PF24796 55 - 206 3.5e-13 WDR55
Beta-prop_WDR5 PF25175 90 - 290 1e-20 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 96 - 249 1e-13 WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2 PF23414 103 - 205 6.3e-11 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd PF23393 107 - 206 2.9e-06 WDR90/POC16, second beta-propeller
WD40_WDHD1_1st PF24817 147 - 291 2.3e-09 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 147 - 235 1.8e-08 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 185 - 294 2.3e-07 CDC20/Fizzy WD40 domain
Beta-prop_EML_2 PF23414 198 - 296 1.6e-07 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 482
AciI CCGC 3 cut(s) 446, 603, 930
AclWI GGATC 2 cut(s) 498, 865
AcsI RAATTY 4 cut(s) 498, 647, 689, 824
AcuI CTGAAG 1 cut(s) 682
AdeI CACNNNGTG 1 cut(s) 369
AfaI GTAC 2 cut(s) 321, 670
AfiI CCNNNNNNNGG 1 cut(s) 283
AflII CTTAAG 1 cut(s) 640
AflIII ACRYGT 1 cut(s) 544
AgsI TTSAA 2 cut(s) 26, 689
AhlI ACTAGT 1 cut(s) 173
AluBI AGCT 5 cut(s) 299, 311, 681, 719, 752
AluI AGCT 5 cut(s) 299, 311, 681, 719, 752
Alw26I GTCTC 4 cut(s) 397, 432, 770, 1190
AlwI GGATC 2 cut(s) 498, 865
AoxI GGCC 2 cut(s) 447, 829
ApeKI GCWGC 3 cut(s) 716, 719, 932
ApoI RAATTY 4 cut(s) 498, 647, 689, 824
AspLEI GCGC 1 cut(s) 636
AspS9I GGNCC 2 cut(s) 830, 1134
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 2 cut(s) 538, 818
AvaII GGWCC 1 cut(s) 1134
BanI GGYRCC 1 cut(s) 482
BbsI GAAGAC 1 cut(s) 736
BbvCI CCTCAGC 1 cut(s) 300
BbvI GCAGC 3 cut(s) 706, 728, 919
BcnI CCSGG 1 cut(s) 167
BcoDI GTCTC 4 cut(s) 397, 432, 770, 1190
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 4 cut(s) 174, 606, 756, 816
BfmI CTRYAG 1 cut(s) 720
BfrI CTTAAG 1 cut(s) 640
BglII AGATCT 1 cut(s) 1150
BisI GCNGC 5 cut(s) 447, 603, 717, 720, 933
BlsI GCNGC 5 cut(s) 448, 604, 718, 721, 934
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 1134
BmgT120I GGNCC 2 cut(s) 830, 1134
BmiI GGNNCC 3 cut(s) 484, 727, 1135
BmrFI CCNGG 1 cut(s) 167
BmrI ACTGGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 826
BmuI ACTGGG 1 cut(s) 222
BoxI GACNNNNGTC 1 cut(s) 763
BpiI GAAGAC 1 cut(s) 736
Bpu10I CCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 770
BsaJI CCNNGG 2 cut(s) 486, 916
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse1I ACTGG 2 cut(s) 91, 217
Bse3DI GCAATG 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 486, 916
BseGI GGATG 6 cut(s) 61, 322, 421, 454, 511, 925
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 4 cut(s) 291, 392, 1029, 1068
BseNI ACTGG 2 cut(s) 91, 217
BseXI GCAGC 3 cut(s) 706, 728, 919
BsgI GTGCAG 1 cut(s) 868
BshFI GGCC 2 cut(s) 449, 831
BshNI GGYRCC 1 cut(s) 482
BsiSI CCGG 1 cut(s) 166
BslFI GGGAC 1 cut(s) 1147
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 4 cut(s) 397, 432, 770, 1190
BsmBI CGTCTC 1 cut(s) 1190
BsmFI GGGAC 1 cut(s) 1147
BsnI GGCC 2 cut(s) 449, 831
Bso31I GGTCTC 1 cut(s) 770
Bsp1407I TGTACA 1 cut(s) 319
Bsp143I GATC 6 cut(s) 111, 199, 490, 661, 857, 1150
BspACI CCGC 3 cut(s) 446, 603, 930
BspANI GGCC 2 cut(s) 449, 831
BspCNI CTCAG 4 cut(s) 292, 393, 1028, 1067
BspLI GGNNCC 3 cut(s) 484, 727, 1135
BspMAI CTGCAG 1 cut(s) 724
BspPI GGATC 2 cut(s) 498, 865
BspT107I GGYRCC 1 cut(s) 482
BspTI CTTAAG 1 cut(s) 640
BspTNI GGTCTC 1 cut(s) 770
BsrDI GCAATG 1 cut(s) 78
BsrGI TGTACA 1 cut(s) 319
BsrI ACTGG 2 cut(s) 91, 217
BssECI CCNNGG 2 cut(s) 486, 916
BssMI GATC 6 cut(s) 111, 199, 490, 661, 857, 1150
Bst4CI ACNGT 4 cut(s) 232, 319, 893, 917
Bst6I CTCTTC 1 cut(s) 153
BstAFI CTTAAG 1 cut(s) 640
BstAUI TGTACA 1 cut(s) 319
BstC8I GCNNGC 2 cut(s) 309, 724
BstDEI CTNAG 4 cut(s) 300, 401, 1015, 1054
BstDSI CCRYGG 1 cut(s) 916
BstF5I GGATG 6 cut(s) 61, 322, 421, 454, 511, 925
BstHHI GCGC 1 cut(s) 636
BstKTI GATC 6 cut(s) 114, 202, 493, 664, 860, 1153
BstMAI GTCTC 4 cut(s) 397, 432, 770, 1190
BstMBI GATC 6 cut(s) 111, 199, 490, 661, 857, 1150
BstMWI GCNNNNNNNGC 1 cut(s) 602
BstNSI RCATGY 1 cut(s) 548
BstPAI GACNNNNGTC 1 cut(s) 763
BstSCI CCNGG 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 720
BstV1I GCAGC 3 cut(s) 706, 728, 919
BstV2I GAAGAC 1 cut(s) 736
BstX2I RGATCY 2 cut(s) 490, 1150
BstYI RGATCY 2 cut(s) 490, 1150
BsuRI GGCC 2 cut(s) 449, 831
BtgI CCRYGG 1 cut(s) 916
BtsCI GGATG 6 cut(s) 61, 322, 421, 454, 511, 925
BtsIMutI CAGTG 2 cut(s) 429, 706
Cac8I GCNNGC 2 cut(s) 309, 724
CfoI GCGC 1 cut(s) 636
Cfr13I GGNCC 2 cut(s) 830, 1134
CseI GACGC 2 cut(s) 114, 808
Csp6I GTAC 2 cut(s) 320, 669
CviAII CATG 3 cut(s) 152, 366, 545
CviQI GTAC 2 cut(s) 320, 669
DdeI CTNAG 4 cut(s) 300, 401, 1015, 1054
DpnI GATC 6 cut(s) 113, 201, 492, 663, 859, 1152
DpnII GATC 6 cut(s) 111, 199, 490, 661, 857, 1150
DraIII CACNNNGTG 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 770
Eco32I GATATC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 1134
Eco57I CTGAAG 1 cut(s) 682
EcoRI GAATTC 1 cut(s) 689
EcoRV GATATC 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 1190
FaeI CATG 3 cut(s) 155, 369, 548
FalI AAGNNNNNCTT 2 cut(s) 623, 655
FaqI GGGAC 1 cut(s) 1147
FatI CATG 3 cut(s) 151, 365, 544
FauI CCCGC 1 cut(s) 937
FauNDI CATATG 2 cut(s) 239, 653
Fnu4HI GCNGC 5 cut(s) 447, 603, 717, 720, 933
FokI GGATG 6 cut(s) 48, 309, 428, 441, 518, 912
Fsp4HI GCNGC 5 cut(s) 447, 603, 717, 720, 933
FspBI CTAG 4 cut(s) 174, 606, 756, 816
GlaI GCGC 1 cut(s) 635
GluI GCNGC 5 cut(s) 447, 603, 717, 720, 933
HaeIII GGCC 2 cut(s) 449, 831
HapII CCGG 1 cut(s) 166
HgaI GACGC 2 cut(s) 114, 808
HhaI GCGC 1 cut(s) 636
Hin1II CATG 3 cut(s) 155, 369, 548
Hin6I GCGC 1 cut(s) 634
HinP1I GCGC 1 cut(s) 634
HincII GTYRAC 1 cut(s) 542
HindII GTYRAC 1 cut(s) 542
HinfI GANTC 8 cut(s) 10, 190, 289, 419, 741, 764, 1025, 1064
HpaII CCGG 1 cut(s) 166
HphI GGTGA 2 cut(s) 538, 818
Hpy166II GTNNAC 4 cut(s) 542, 671, 809, 896
Hpy188I TCNGA 9 cut(s) 163, 253, 402, 490, 519, 577, 749, 1030, 1069
Hpy188III TCNNGA 5 cut(s) 194, 343, 356, 458, 1084
Hpy8I GTNNAC 4 cut(s) 542, 671, 809, 896
HpyAV CCTTC 2 cut(s) 32, 580
HpyCH4III ACNGT 4 cut(s) 232, 319, 893, 917
HpyCH4V TGCA 7 cut(s) 83, 237, 273, 716, 722, 851, 885
HpyF10VI GCNNNNNNNGC 1 cut(s) 602
HpyF3I CTNAG 4 cut(s) 300, 401, 1015, 1054
Hsp92II CATG 3 cut(s) 155, 369, 548
HspAI GCGC 1 cut(s) 634
Kzo9I GATC 6 cut(s) 111, 199, 490, 661, 857, 1150
LmnI GCTCC 1 cut(s) 731
Lsp1109I GCAGC 3 cut(s) 706, 728, 919
LweI GCATC 1 cut(s) 826
MaeI CTAG 4 cut(s) 174, 606, 756, 816
MaeIII GTNAC 9 cut(s) 169, 208, 313, 343, 556, 707, 1007, 1046, 1081
MalI GATC 6 cut(s) 113, 201, 492, 663, 859, 1152
MboI GATC 6 cut(s) 111, 199, 490, 661, 857, 1150
MboII GAAGA 7 cut(s) 140, 736, 884, 995, 1034, 1073, 1105
MfeI CAATTG 1 cut(s) 1213
MflI RGATCY 2 cut(s) 490, 1150
MluCI AATT 5 cut(s) 498, 647, 689, 824, 1213
MlyI GAGTC 4 cut(s) 4, 199, 750, 773
MmeI TCCRAC 2 cut(s) 975, 1014
MseI TTAA 1 cut(s) 641
MslI CAYNNNNRTG 2 cut(s) 459, 1118
MspA1I CMGCKG 3 cut(s) 299, 719, 932
MspCI CTTAAG 1 cut(s) 640
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 1 cut(s) 167
MunI CAATTG 1 cut(s) 1213
MwoI GCNNNNNNNGC 1 cut(s) 602
NciI CCSGG 1 cut(s) 167
NdeI CATATG 2 cut(s) 239, 653
NdeII GATC 6 cut(s) 111, 199, 490, 661, 857, 1150
NlaIII CATG 3 cut(s) 155, 369, 548
NlaIV GGNNCC 3 cut(s) 484, 727, 1135
NmuCI GTSAC 4 cut(s) 343, 1007, 1046, 1081
NspI RCATGY 1 cut(s) 548
PciI ACATGT 1 cut(s) 544
PfeI GAWTC 4 cut(s) 289, 419, 1025, 1064
PkrI GCNGC 5 cut(s) 448, 604, 718, 721, 934
PleI GAGTC 4 cut(s) 4, 198, 749, 772
PpsI GAGTC 4 cut(s) 4, 198, 749, 772
PscI ACATGT 1 cut(s) 544
PshAI GACNNNNGTC 1 cut(s) 763
PspN4I GGNNCC 3 cut(s) 484, 727, 1135
PspPI GGNCC 2 cut(s) 830, 1134
PstI CTGCAG 1 cut(s) 724
PsuI RGATCY 2 cut(s) 490, 1150
PvuII CAGCTG 2 cut(s) 299, 719
RsaI GTAC 2 cut(s) 321, 670
RsaNI GTAC 2 cut(s) 320, 669
RseI CAYNNNNRTG 2 cut(s) 459, 1118
SaqAI TTAA 1 cut(s) 641
SatI GCNGC 5 cut(s) 447, 603, 717, 720, 933
Sau3AI GATC 6 cut(s) 111, 199, 490, 661, 857, 1150
Sau96I GGNCC 2 cut(s) 830, 1134
SchI GAGTC 4 cut(s) 4, 199, 750, 773
ScrFI CCNGG 1 cut(s) 167
SfaNI GCATC 1 cut(s) 826
SfcI CTRYAG 1 cut(s) 720
SinI GGWCC 1 cut(s) 1134
SmiMI CAYNNNNRTG 2 cut(s) 459, 1118
SmlI CTYRAG 2 cut(s) 429, 640
SmoI CTYRAG 2 cut(s) 429, 640
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 5 cut(s) 498, 647, 689, 824, 1213
SsiI CCGC 3 cut(s) 446, 603, 930
SspMI CTAG 4 cut(s) 174, 606, 756, 816
StyD4I CCNGG 1 cut(s) 165
TaaI ACNGT 4 cut(s) 232, 319, 893, 917
TaqI TCGA 3 cut(s) 54, 693, 906
TasI AATT 5 cut(s) 498, 647, 689, 824, 1213
TatI WGTACW 1 cut(s) 319
TauI GCSGC 2 cut(s) 449, 605
TfiI GAWTC 4 cut(s) 289, 419, 1025, 1064
Tru1I TTAA 1 cut(s) 641
Tru9I TTAA 1 cut(s) 641
TscAI CASTG 2 cut(s) 429, 706
TseFI GTSAC 4 cut(s) 343, 1007, 1046, 1081
TseI GCWGC 3 cut(s) 716, 719, 932
Tsp45I GTSAC 4 cut(s) 343, 1007, 1046, 1081
TspDTI ATGAA 4 cut(s) 114, 140, 443, 640
TspGWI ACGGA 3 cut(s) 882, 1130, 1214
TspRI CASTG 2 cut(s) 429, 706
Vha464I CTTAAG 1 cut(s) 640
VpaK11BI GGWCC 1 cut(s) 1134
XapI RAATTY 4 cut(s) 498, 647, 689, 824
XceI RCATGY 1 cut(s) 548
XspI CTAG 4 cut(s) 174, 606, 756, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.