Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0017437

Physical Location & Seq

Genomic Coordinates Forward (+)

22845472 .. 22866886

Gene Structure 21415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG118900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGTCCCCTATAAATAGAGGCCTCTACATTGCGGCTGGTGGGATTGATAGAAAAGTTGTGATCTTCGATCTAAAGTCAAACAAAGTCATATCGACTCTAACTAGTCATTTCGGCAGGGTCACCAGTGTCCAGGATGATTCAGTGTCTCAAGGCTATACATCTGCGGCCTTTCATCCAGATGGTATCTTTCATCCAGATGGTATCTTACTCGGAGTAGGCACCTCGGATGGTCTTGTCAAAATTTGGGATGTAAAAAATCAGAACATGGTGAGAAGTCTTGGTGAGCATGTTGGCAAAGTTACTTCCATCTCCTTCTCTGAAAATAGCAACTTTTTCGTGGATAAGCGCAACTTAAGTAATTGCATATGGAGTGATTTTGGTACACGAACGAGCTGTGTTGAATTCGACTTCAGTGGAAGTTACCTTGCAGCTGCATGCTTTTATAAAACGAGAGTTTTCCGAGCTTCTAGTCTGGAGTCAAAATGGAAGATCATCAATAATTTCATAACTTCCCGGGCAGGTGAACAAACTTGCGTAAAATTTAGCCCAAATGCCCGATATATTGTAGTAGGATCAACAGACAGAAAAGAAAACCTCTGCAATTACTGCGAACATATCATCGTTGAGGAGTATGACTACGATCGTCCCACCCCTGCTGATTGTGCTGATGTTATGGAGATGTTAGATTGCTCTTATGCTGAGGTTATGAAGACAATAGATTGCTACAACATAACGAACAACCTTCCTGAACATGATGTTGAGGCTGAGACATCTGAGAAGTCTGCGGATTCGGATGGTGAGTCATTTGAGAAGTTTGAGGAATTGGAGGATGAGGTGTCTGAGAAGTCTTCTGAAGCAGAAGATGAGACCTCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022607 GO:0022613 GO:0022618 GO:0030312 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0034622 GO:0034641 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0065003 GO:0070013 GO:0070534 GO:0070647 GO:0071006 GO:0071012 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080008 GO:0090304 GO:0098542 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko04120 map03040 map04120

Pfam Domains

Protein Families

Prp19 U-box WD40

Protein Analysis

293

Amino Acids

32.68

Weight (kDa)

4.65

Isoelectric Point (pI)

29.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_1st	PF25171	11 - 114	4.9e-06	WDR36/Utp21 first beta-propeller
WD40_Prp19	PF24814	41 - 195	3.1e-25	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	64 - 114	3.9e-07	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	64 - 113	6.5e-08	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	64 - 133	6.3e-07	CDC20/Fizzy WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0017437)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0402341 RchiOBHm_Chr4g0402351
rosa_laevigata	RLG00000009101
rosa_samantha	Rh4AG112100 Rh4BG104700 Rh4CG118900 Rh4DG101700 Rh4DG101800 Rh4DG101900 Rh4DG102000 Rh4DG102100 Rh4DG102500 Rh7DG037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AarI	CACCTGC	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	512
AccB1I	GGYRCC	1 cut(s)	221
AciI	CCGC	3 cut(s)	35, 167, 788
AclWI	GGATC	1 cut(s)	583
AcsI	RAATTY	3 cut(s)	243, 404, 542
AcuI	CTGAAG	2 cut(s)	397, 876
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	385
AflII	CTTAAG	1 cut(s)	355
AgsI	TTSAA	1 cut(s)	404
AhlI	ACTAGT	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	3 cut(s)	396, 434, 467
AluI	AGCT	3 cut(s)	396, 434, 467
Alw26I	GTCTC	3 cut(s)	153, 764, 863
AlwI	GGATC	1 cut(s)	583
Ama87I	CYCGRG	1 cut(s)	516
AoxI	GGCC	2 cut(s)	22, 168
ApeKI	GCWGC	2 cut(s)	431, 434
ApoI	RAATTY	3 cut(s)	243, 404, 542
AspLEI	GCGC	1 cut(s)	351
AsuC2I	CCSGG	2 cut(s)	517, 518
AsuHPI	GGTGA	5 cut(s)	115, 283, 296, 536, 812
AvaI	CYCGRG	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	2 cut(s)	719, 843
BbvCI	CCTCAGC	1 cut(s)	702
BbvI	GCAGC	2 cut(s)	421, 443
BccI	CCATC	5 cut(s)	176, 194, 224, 317, 791
BcgI	CGANNNNNNTGC	2 cut(s)	319, 353
BciT130I	CCWGG	1 cut(s)	134
BcnI	CCSGG	2 cut(s)	517, 518
BcoDI	GTCTC	3 cut(s)	153, 764, 863
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	2 cut(s)	105, 471
BfrI	CTTAAG	1 cut(s)	355
BfuAI	ACCTGC	1 cut(s)	512
BisI	GCNGC	4 cut(s)	36, 168, 432, 435
BlsI	GCNGC	4 cut(s)	37, 169, 433, 436
Bme1390I	CCNGG	3 cut(s)	134, 517, 518
BmeT110I	CYCGRG	1 cut(s)	516
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	3 cut(s)	134, 517, 518
BpiI	GAAGAC	2 cut(s)	719, 843
BpmI	CTGGAG	1 cut(s)	497
Bpu10I	CCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	135
BpuMI	CCSGG	2 cut(s)	517, 518
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	863
BsaJI	CCNNGG	2 cut(s)	225, 516
Bse1I	ACTGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	2 cut(s)	225, 516
BseGI	GGATG	7 cut(s)	142, 175, 193, 235, 256, 802, 838
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	5 cut(s)	693, 759, 768, 834, 867
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	644
BseXI	GCAGC	2 cut(s)	421, 443
Bsh1285I	CGRYCG	1 cut(s)	646
BshFI	GGCC	2 cut(s)	24, 170
BshNI	GGYRCC	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	646
BsiHKCI	CYCGRG	1 cut(s)	516
BsiSI	CCGG	1 cut(s)	517
BslFI	GGGAC	1 cut(s)	633
BsmAI	GTCTC	3 cut(s)	153, 764, 863
BsmFI	GGGAC	1 cut(s)	633
BsnI	GGCC	2 cut(s)	24, 170
Bso31I	GGTCTC	1 cut(s)	863
BsoBI	CYCGRG	1 cut(s)	516
Bsp143I	GATC	5 cut(s)	63, 70, 492, 575, 643
BspACI	CCGC	3 cut(s)	35, 167, 788
BspANI	GGCC	2 cut(s)	24, 170
BspCNI	CTCAG	5 cut(s)	694, 760, 769, 835, 868
BspLI	GGNNCC	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	512
BspPI	GGATC	1 cut(s)	583
BspT107I	GGYRCC	1 cut(s)	221
BspTI	CTTAAG	1 cut(s)	355
BspTNI	GGTCTC	1 cut(s)	863
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	225, 516
BssMI	GATC	5 cut(s)	63, 70, 492, 575, 643
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	134
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	355
BstAPI	GCANNNNNTGC	1 cut(s)	609
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	5 cut(s)	702, 768, 777, 843, 876
BstEII	GGTNACC	1 cut(s)	121
BstF5I	GGATG	7 cut(s)	142, 175, 193, 235, 256, 802, 838
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	5 cut(s)	66, 73, 495, 578, 646
BstMAI	GTCTC	3 cut(s)	153, 764, 863
BstMBI	GATC	5 cut(s)	63, 70, 492, 575, 643
BstMCI	CGRYCG	1 cut(s)	646
BstMWI	GCNNNNNNNGC	2 cut(s)	609, 665
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	2 cut(s)	293, 441
BstPI	GGTNACC	1 cut(s)	121
BstSCI	CCNGG	3 cut(s)	132, 515, 516
BstV1I	GCAGC	2 cut(s)	421, 443
BstV2I	GAAGAC	2 cut(s)	719, 843
BsuRI	GGCC	2 cut(s)	24, 170
BtsCI	GGATG	7 cut(s)	142, 175, 193, 235, 256, 802, 838
BtsIMutI	CAGTG	3 cut(s)	133, 150, 421
BveI	ACCTGC	1 cut(s)	512
Cac8I	GCNNGC	1 cut(s)	439
CfoI	GCGC	1 cut(s)	351
Cfr9I	CCCGGG	1 cut(s)	516
Csp6I	GTAC	1 cut(s)	384
CviAII	CATG	4 cut(s)	268, 290, 438, 755
CviJI	RGCY	9 cut(s)	24, 38, 156, 170, 396, 434, 467, 549, 767
CviKI_1	RGCY	9 cut(s)	24, 38, 156, 170, 396, 434, 467, 549, 767
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	5 cut(s)	702, 768, 777, 843, 876
DpnI	GATC	5 cut(s)	65, 72, 494, 577, 645
DpnII	GATC	5 cut(s)	63, 70, 492, 575, 643
Eco147I	AGGCCT	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	863
Eco57I	CTGAAG	2 cut(s)	397, 876
Eco88I	CYCGRG	1 cut(s)	516
Eco91I	GGTNACC	1 cut(s)	121
EcoO65I	GGTNACC	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	132
FaeI	CATG	4 cut(s)	271, 293, 441, 758
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	1 cut(s)	633
FatI	CATG	4 cut(s)	267, 289, 437, 754
FauNDI	CATATG	1 cut(s)	368
Fnu4HI	GCNGC	4 cut(s)	36, 168, 432, 435
FokI	GGATG	7 cut(s)	149, 162, 180, 242, 263, 809, 845
Fsp4HI	GCNGC	4 cut(s)	36, 168, 432, 435
FspBI	CTAG	2 cut(s)	105, 471
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	4 cut(s)	36, 168, 432, 435
GsuI	CTGGAG	1 cut(s)	497
HaeIII	GGCC	2 cut(s)	24, 170
HapII	CCGG	1 cut(s)	517
HhaI	GCGC	1 cut(s)	351
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	271, 293, 441, 758
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	5 cut(s)	97, 140, 479, 791, 803
HpaII	CCGG	1 cut(s)	517
HphI	GGTGA	5 cut(s)	115, 283, 296, 536, 812
Hpy166II	GTNNAC	2 cut(s)	386, 527
Hpy188III	TCNNGA	4 cut(s)	179, 197, 476, 749
Hpy8I	GTNNAC	2 cut(s)	386, 527
HpyAV	CCTTC	2 cut(s)	325, 755
HpyCH4V	TGCA	4 cut(s)	366, 431, 437, 603
HpyF10VI	GCNNNNNNNGC	2 cut(s)	609, 665
HpyF3I	CTNAG	5 cut(s)	702, 768, 777, 843, 876
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	271, 293, 441, 758
HspAI	GCGC	1 cut(s)	349
Kzo9I	GATC	5 cut(s)	63, 70, 492, 575, 643
Lsp1109I	GCAGC	2 cut(s)	421, 443
MaeI	CTAG	2 cut(s)	105, 471
MaeIII	GTNAC	3 cut(s)	121, 301, 422
MalI	GATC	5 cut(s)	65, 72, 494, 577, 645
MboI	GATC	5 cut(s)	63, 70, 492, 575, 643
MboII	GAAGA	5 cut(s)	58, 502, 724, 843, 875
MluCI	AATT	7 cut(s)	243, 361, 404, 502, 542, 604, 824
MlyI	GAGTC	3 cut(s)	91, 488, 812
MseI	TTAA	1 cut(s)	356
MslI	CAYNNNNRTG	2 cut(s)	180, 198
MspA1I	CMGCKG	1 cut(s)	434
MspCI	CTTAAG	1 cut(s)	355
MspI	CCGG	1 cut(s)	517
MspR9I	CCNGG	3 cut(s)	134, 517, 518
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	609, 665
NciI	CCSGG	2 cut(s)	517, 518
NdeI	CATATG	1 cut(s)	368
NdeII	GATC	5 cut(s)	63, 70, 492, 575, 643
NlaIII	CATG	4 cut(s)	271, 293, 441, 758
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	2 cut(s)	293, 441
PaeI	GCATGC	1 cut(s)	441
PaqCI	CACCTGC	1 cut(s)	512
PceI	AGGCCT	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	140, 791
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	4 cut(s)	37, 169, 433, 436
Ple19I	CGATCG	1 cut(s)	646
PleI	GAGTC	3 cut(s)	91, 487, 811
PpsI	GAGTC	3 cut(s)	91, 487, 811
PsiI	TTATAA	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	132
PspEI	GGTNACC	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	223
PvuI	CGATCG	1 cut(s)	646
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
RseI	CAYNNNNRTG	2 cut(s)	180, 198
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	4 cut(s)	36, 168, 432, 435
Sau3AI	GATC	5 cut(s)	63, 70, 492, 575, 643
SchI	GAGTC	3 cut(s)	91, 488, 812
ScrFI	CCNGG	3 cut(s)	134, 517, 518
SmaI	CCCGGG	1 cut(s)	518
SmiMI	CAYNNNNRTG	2 cut(s)	180, 198
SmlI	CTYRAG	2 cut(s)	150, 355
SmoI	CTYRAG	2 cut(s)	150, 355
SpeI	ACTAGT	1 cut(s)	104
SphI	GCATGC	1 cut(s)	441
Sse9I	AATT	7 cut(s)	243, 361, 404, 502, 542, 604, 824
SseBI	AGGCCT	1 cut(s)	24
SsiI	CCGC	3 cut(s)	35, 167, 788
SspMI	CTAG	2 cut(s)	105, 471
StuI	AGGCCT	1 cut(s)	24
StyD4I	CCNGG	3 cut(s)	132, 515, 516
TaqI	TCGA	3 cut(s)	69, 95, 408
TasI	AATT	7 cut(s)	243, 361, 404, 502, 542, 604, 824
TauI	GCSGC	2 cut(s)	38, 170
TfiI	GAWTC	2 cut(s)	140, 791
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	3 cut(s)	133, 150, 421
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	2 cut(s)	431, 434
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	4 cut(s)	164, 182, 496, 725
TspMI	CCCGGG	1 cut(s)	516
TspRI	CASTG	3 cut(s)	133, 150, 421
Vha464I	CTTAAG	1 cut(s)	355
XapI	RAATTY	3 cut(s)	243, 404, 542
XceI	RCATGY	2 cut(s)	293, 441
XmaI	CCCGGG	1 cut(s)	516
XspI	CTAG	2 cut(s)	105, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.