Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0017437

Physical Location & Seq

Genomic Coordinates Reverse (-)

46521173 .. 46527627

Gene Structure 6455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009101

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCTCGCCATCACCGTGGCCGACTTCTCCGTCACAAACGGAGCATTGAACTCAAGAGGGATATGCTTGCCAAGCTGAAGCTCAAAGGCAAAACTGAGGTATCCTTCACTTGGGTTCGTCCTACTAAAATCCGCCATTACAGCAAGATGCTATTGTCTCCTCCTTTCCTTCAAAGGGTGAATGTGACTTTGAGACGTTGTTATGACCAGCATCTGACCATCTATCCCTGCATCTTGCTTTTTTGGGATCTCGAGCTCCCCTTGAAAAAGAAAGTGAATACTAGTGATTCAGTAAGAATCTGCGGGTATGGTGTCCATATTGCAACGTTGGATATCATTGCAGCTGGTGGGATTGATAGAAAAGTTGTGATCTTCGATCTAAAGTCAAACAAAGTCATATCTACTCTAACTGGTCATTTCGGCAGGGTCACCAGTGTTAGATTTGTCAAGGATGATTCAGTGTCTCAAGGTTATACATCTGCGGCCTTTCATCTAGATGGTGTCTTACTCGGAGTAGGCACCTCGGATGGTCTTGTCAAAATTTGGGATGTAAAAAGTCAGAACATGGTGAAAAGTCTTTGTGAGCATGTTGGCAAAGTAACTTCCATCTCCTTCTCTGAAAATGGCAACTTTTTCGCCGTAGGTGTTCACTACAAAAAGTTGGATAGAGAATTGGATAATACCTTATTTTGTTGTCTAACATTTGAGTTGGATCAAACTGCCGCTAGTGATGGTTTTAGATGTTGGGATAAGCACAACTTAAGTAATTGCATATGGGGTGATTTTGGTACACGAATGAGCTATGTTGAATTCGACTTCAGTGAAGTTACCTTGCAGCTGCAGGCTCCTATAAAACGAGATCAGTTTTATGAAGATGTTCCTAGCATTGAGAGGCAATTGATAGAAGAAAAGGAGTTGGCAGAAAAGAAGGAGTCGGCAGAAGAGGAGGAATCTAATGTCTTCTTGGACGTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022607 GO:0022613 GO:0022618 GO:0030312 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0034622 GO:0034641 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0065003 GO:0070013 GO:0070534 GO:0070647 GO:0071006 GO:0071012 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080008 GO:0090304 GO:0098542 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko04120 map03040 map04120

Pfam Domains

Protein Families

Prp19 U-box WD40

Protein Analysis

326

Amino Acids

37.26

Weight (kDa)

8.67

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	105 - 153	1.8e-07	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	109 - 220	8.5e-09	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	109 - 210	7.9e-09	WDR36/Utp21 first beta-propeller
ANAPC4_WD40	PF12894	109 - 208	2e-06	Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_WDR3_1st	PF25173	112 - 219	3.7e-15	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	112 - 220	8.1e-06	WDR3 second beta-propeller domain
WD40_Prp19	PF24814	150 - 218	1.3e-20	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	155 - 217	1.9e-07	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	158 - 219	1.3e-09	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	160 - 213	4.4e-08	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017437)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0402341 RchiOBHm_Chr4g0402351
rosa_laevigata	RLG00000009101
rosa_samantha	Rh4AG112100 Rh4BG104700 Rh4CG118900 Rh4DG101700 Rh4DG101800 Rh4DG101900 Rh4DG102000 Rh4DG102100 Rh4DG102500 Rh7DG037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	518
AciI	CCGC	4 cut(s)	133, 303, 482, 723
AclI	AACGTT	1 cut(s)	326
AclWI	GGATC	2 cut(s)	255, 720
AcoI	YGGCCR	1 cut(s)	19
AcsI	RAATTY	2 cut(s)	540, 809
AcuI	CTGAAG	2 cut(s)	98, 802
AfaI	GTAC	1 cut(s)	790
AfiI	CCNNNNNNNGG	2 cut(s)	111, 175
AflII	CTTAAG	1 cut(s)	760
AgsI	TTSAA	4 cut(s)	50, 173, 265, 809
AhlI	ACTAGT	1 cut(s)	281
AluBI	AGCT	6 cut(s)	76, 82, 256, 344, 801, 838
AluI	AGCT	6 cut(s)	76, 82, 256, 344, 801, 838
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	3 cut(s)	162, 187, 468
AlwI	GGATC	2 cut(s)	255, 720
AlwNI	CAGNNNCTG	1 cut(s)	214
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	2 cut(s)	19, 483
ApeKI	GCWGC	3 cut(s)	341, 835, 838
ApoI	RAATTY	2 cut(s)	540, 809
Asp700I	GAANNNNTTC	1 cut(s)	876
AsuHPI	GGTGA	5 cut(s)	5, 190, 421, 580, 791
AvaI	CYCGRG	1 cut(s)	251
BaeI	ACNNNNGTAYC	2 cut(s)	84, 117
BanI	GGYRCC	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	952
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	353, 825, 847
BccI	CCATC	6 cut(s)	18, 227, 491, 521, 614, 725
BceAI	ACGGC	1 cut(s)	623
BcgI	CGANNNNNNTGC	2 cut(s)	616, 650
BciVI	GTATCC	1 cut(s)	112
BcoDI	GTCTC	3 cut(s)	162, 187, 468
BcuI	ACTAGT	1 cut(s)	281
BfaI	CTAG	4 cut(s)	282, 494, 726, 882
BfmI	CTRYAG	1 cut(s)	839
BfrI	CTTAAG	1 cut(s)	760
BfuI	GTATCC	1 cut(s)	112
BisI	GCNGC	5 cut(s)	342, 483, 723, 836, 839
BlsI	GCNGC	5 cut(s)	343, 484, 724, 837, 840
BmeT110I	CYCGRG	1 cut(s)	251
BmiI	GGNNCC	2 cut(s)	520, 846
BmsI	GCATC	3 cut(s)	138, 220, 240
BpiI	GAAGAC	1 cut(s)	952
BpuEI	CTTGAG	2 cut(s)	38, 450
BsaJI	CCNNGG	2 cut(s)	16, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 175
Bse1I	ACTGG	2 cut(s)	415, 432
Bse3DI	GCAATG	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	16, 522
BseGI	GGATG	3 cut(s)	457, 532, 553
BseLI	CCNNNNNNNGG	2 cut(s)	111, 175
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	2 cut(s)	415, 432
BseRI	GAGGAG	2 cut(s)	150, 959
BseXI	GCAGC	3 cut(s)	353, 825, 847
BshFI	GGCC	2 cut(s)	21, 485
BshNI	GGYRCC	1 cut(s)	518
BsiHKAI	GWGCWC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	251
BslI	CCNNNNNNNGG	2 cut(s)	111, 175
BsmAI	GTCTC	3 cut(s)	162, 187, 468
BsmBI	CGTCTC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	21, 485
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	5 cut(s)	247, 369, 376, 712, 859
BspACI	CCGC	4 cut(s)	133, 303, 482, 723
BspANI	GGCC	2 cut(s)	21, 485
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	520, 846
BspMAI	CTGCAG	1 cut(s)	843
BspPI	GGATC	2 cut(s)	255, 720
BspT107I	GGYRCC	1 cut(s)	518
BspTI	CTTAAG	1 cut(s)	760
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	415, 432
BssECI	CCNNGG	2 cut(s)	16, 522
BssMI	GATC	5 cut(s)	247, 369, 376, 712, 859
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	936
BstAFI	CTTAAG	1 cut(s)	760
BstC8I	GCNNGC	3 cut(s)	7, 69, 843
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	16
BstEII	GGTNACC	1 cut(s)	427
BstF5I	GGATG	3 cut(s)	457, 532, 553
BstKTI	GATC	5 cut(s)	250, 372, 379, 715, 862
BstMAI	GTCTC	3 cut(s)	162, 187, 468
BstMBI	GATC	5 cut(s)	247, 369, 376, 712, 859
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 141
BstNSI	RCATGY	1 cut(s)	590
BstPI	GGTNACC	1 cut(s)	427
BstSFI	CTRYAG	1 cut(s)	839
BstV1I	GCAGC	3 cut(s)	353, 825, 847
BstV2I	GAAGAC	1 cut(s)	952
BstX2I	RGATCY	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	21, 485
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	3 cut(s)	457, 532, 553
BtsIMutI	CAGTG	3 cut(s)	439, 465, 826
Cac8I	GCNNGC	3 cut(s)	7, 69, 843
CaiI	CAGNNNCTG	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	789
CviAII	CATG	2 cut(s)	565, 587
CviQI	GTAC	1 cut(s)	789
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	5 cut(s)	249, 371, 378, 714, 861
DpnII	GATC	5 cut(s)	247, 369, 376, 712, 859
DrdI	GACNNNNNNGTC	1 cut(s)	30
DseDI	GACNNNNNNGTC	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	936
EarI	CTCTTC	1 cut(s)	936
EciI	GGCGGA	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	334
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	98, 802
Eco88I	CYCGRG	1 cut(s)	251
Eco91I	GGTNACC	1 cut(s)	427
EcoICRI	GAGCTC	1 cut(s)	256
EcoO65I	GGTNACC	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	809
EcoRV	GATATC	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	2 cut(s)	568, 590
FalI	AAGNNNNNCTT	2 cut(s)	743, 775
FatI	CATG	2 cut(s)	564, 586
FauI	CCCGC	1 cut(s)	296
FauNDI	CATATG	1 cut(s)	773
Fnu4HI	GCNGC	5 cut(s)	342, 483, 723, 836, 839
FokI	GGATG	3 cut(s)	464, 539, 560
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	5 cut(s)	342, 483, 723, 836, 839
FspBI	CTAG	4 cut(s)	282, 494, 726, 882
GluI	GCNGC	5 cut(s)	342, 483, 723, 836, 839
HaeIII	GGCC	2 cut(s)	21, 485
Hin1II	CATG	2 cut(s)	568, 590
HinfI	GANTC	5 cut(s)	287, 297, 455, 932, 950
HphI	GGTGA	5 cut(s)	5, 190, 421, 580, 791
Hpy166II	GTNNAC	2 cut(s)	649, 791
Hpy188I	TCNGA	5 cut(s)	216, 512, 526, 561, 619
Hpy188III	TCNNGA	3 cut(s)	55, 251, 494
Hpy8I	GTNNAC	2 cut(s)	649, 791
HpyAV	CCTTC	4 cut(s)	115, 179, 622, 922
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	3 cut(s)	196, 326, 969
HpyCH4V	TGCA	6 cut(s)	231, 323, 341, 771, 835, 841
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 141
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	3 cut(s)	196, 326, 969
Hsp92II	CATG	2 cut(s)	568, 590
Kzo9I	GATC	5 cut(s)	247, 369, 376, 712, 859
LmnI	GCTCC	3 cut(s)	42, 261, 850
LpnPI	CCDG	7 cut(s)	221, 241, 330, 396, 409, 445, 827
Lsp1109I	GCAGC	3 cut(s)	353, 825, 847
LweI	GCATC	3 cut(s)	138, 220, 240
MaeI	CTAG	4 cut(s)	282, 494, 726, 882
MaeII	ACGT	3 cut(s)	196, 326, 969
MaeIII	GTNAC	5 cut(s)	32, 184, 427, 598, 826
MalI	GATC	5 cut(s)	249, 371, 378, 714, 861
MboI	GATC	5 cut(s)	247, 369, 376, 712, 859
MboII	GAAGA	5 cut(s)	364, 884, 917, 952, 953
MfeI	CAATTG	1 cut(s)	896
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	5 cut(s)	540, 671, 766, 809, 896
MlyI	GAGTC	1 cut(s)	941
MmeI	TCCRAC	3 cut(s)	309, 642, 690
MnlI	CCTC	7 cut(s)	51, 91, 171, 532, 885, 937, 940
MroXI	GAANNNNTTC	1 cut(s)	876
MseI	TTAA	1 cut(s)	761
MslI	CAYNNNNRTG	2 cut(s)	15, 495
MspA1I	CMGCKG	2 cut(s)	344, 838
MspCI	CTTAAG	1 cut(s)	760
MunI	CAATTG	1 cut(s)	896
MwoI	GCNNNNNNNGC	2 cut(s)	73, 141
NdeI	CATATG	1 cut(s)	773
NdeII	GATC	5 cut(s)	247, 369, 376, 712, 859
NlaIII	CATG	2 cut(s)	568, 590
NlaIV	GGNNCC	2 cut(s)	520, 846
NmuCI	GTSAC	3 cut(s)	32, 184, 427
NspI	RCATGY	1 cut(s)	590
PaeR7I	CTCGAG	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	876
PfeI	GAWTC	4 cut(s)	287, 297, 455, 950
PkrI	GCNGC	5 cut(s)	343, 484, 724, 837, 840
PleI	GAGTC	1 cut(s)	940
PpsI	GAGTC	1 cut(s)	940
Psp124BI	GAGCTC	1 cut(s)	258
Psp1406I	AACGTT	1 cut(s)	326
PspEI	GGTNACC	1 cut(s)	427
PspN4I	GGNNCC	2 cut(s)	520, 846
PstI	CTGCAG	1 cut(s)	843
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	247
PvuII	CAGCTG	2 cut(s)	344, 838
RsaI	GTAC	1 cut(s)	790
RsaNI	GTAC	1 cut(s)	789
RseI	CAYNNNNRTG	2 cut(s)	15, 495
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	761
SatI	GCNGC	5 cut(s)	342, 483, 723, 836, 839
Sau3AI	GATC	5 cut(s)	247, 369, 376, 712, 859
SchI	GAGTC	1 cut(s)	941
SduI	GDGCHC	1 cut(s)	258
SfaNI	GCATC	3 cut(s)	138, 220, 240
SfcI	CTRYAG	1 cut(s)	839
Sfr274I	CTCGAG	1 cut(s)	251
SlaI	CTCGAG	1 cut(s)	251
SmiMI	CAYNNNNRTG	2 cut(s)	15, 495
SmlI	CTYRAG	4 cut(s)	53, 251, 465, 760
SmoI	CTYRAG	4 cut(s)	53, 251, 465, 760
SpeI	ACTAGT	1 cut(s)	281
Sse9I	AATT	5 cut(s)	540, 671, 766, 809, 896
SsiI	CCGC	4 cut(s)	133, 303, 482, 723
SspMI	CTAG	4 cut(s)	282, 494, 726, 882
SstI	GAGCTC	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	3 cut(s)	199, 329, 972
TaqI	TCGA	3 cut(s)	252, 375, 813
TasI	AATT	5 cut(s)	540, 671, 766, 809, 896
TauI	GCSGC	2 cut(s)	485, 725
TfiI	GAWTC	4 cut(s)	287, 297, 455, 950
Tru1I	TTAA	1 cut(s)	761
Tru9I	TTAA	1 cut(s)	761
TscAI	CASTG	3 cut(s)	439, 465, 826
TseFI	GTSAC	3 cut(s)	32, 184, 427
TseI	GCWGC	3 cut(s)	341, 835, 838
Tsp45I	GTSAC	3 cut(s)	32, 184, 427
TspDTI	ATGAA	2 cut(s)	479, 885
TspGWI	ACGGA	2 cut(s)	20, 55
TspRI	CASTG	3 cut(s)	439, 465, 826
Vha464I	CTTAAG	1 cut(s)	760
XapI	RAATTY	2 cut(s)	540, 809
XbaI	TCTAGA	1 cut(s)	493
XceI	RCATGY	1 cut(s)	590
XhoI	CTCGAG	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	876
XspI	CTAG	4 cut(s)	282, 494, 726, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.