DDE superfamily endonuclease
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0145511 RchiOBHm_Chr2g0162641 RchiOBHm_Chr4g0406001 RchiOBHm_Chr5g0009581 RchiOBHm_Chr7g0231491 RchiOBHm_Chr7g0242041 |
| rosa_roxburghii | Rroxscaffold_3G00224770 Rroxscaffold_3G00239460 Rroxscaffold_3G00254770 Rroxscaffold_5G00363820 |
| rosa_samantha | Rh2AG173700 Rh2BG181300 Rh2DG179900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 241 |
| AciI | CCGC | 1 cut(s) | 103 |
| AdeI | CACNNNGTG | 1 cut(s) | 86 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 98 |
| Alw21I | GWGCWC | 1 cut(s) | 190 |
| Alw26I | GTCTC | 1 cut(s) | 67 |
| Alw44I | GTGCAC | 1 cut(s) | 186 |
| ApaLI | GTGCAC | 1 cut(s) | 186 |
| AspLEI | GCGC | 1 cut(s) | 241 |
| AsuHPI | GGTGA | 1 cut(s) | 98 |
| BaeGI | GKGCMC | 1 cut(s) | 190 |
| Bbv12I | GWGCWC | 1 cut(s) | 190 |
| BcoDI | GTCTC | 1 cut(s) | 67 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 98 |
| Bse3DI | GCAATG | 1 cut(s) | 39 |
| BseGI | GGATG | 1 cut(s) | 157 |
| BseMI | GCAATG | 1 cut(s) | 39 |
| BseSI | GKGCMC | 1 cut(s) | 190 |
| Bsh1236I | CGCG | 1 cut(s) | 241 |
| BsiHKAI | GWGCWC | 1 cut(s) | 190 |
| BsmAI | GTCTC | 1 cut(s) | 67 |
| BsmI | GAATGC | 1 cut(s) | 241 |
| Bsp1286I | GDGCHC | 1 cut(s) | 190 |
| BspACI | CCGC | 1 cut(s) | 103 |
| BspFNI | CGCG | 1 cut(s) | 241 |
| BsrDI | GCAATG | 1 cut(s) | 39 |
| Bst4CI | ACNGT | 1 cut(s) | 185 |
| BstF5I | GGATG | 1 cut(s) | 157 |
| BstFNI | CGCG | 1 cut(s) | 241 |
| BstHHI | GCGC | 1 cut(s) | 241 |
| BstMAI | GTCTC | 1 cut(s) | 67 |
| BstNSI | RCATGY | 1 cut(s) | 80 |
| BstSLI | GKGCMC | 1 cut(s) | 190 |
| BstUI | CGCG | 1 cut(s) | 241 |
| BtsCI | GGATG | 1 cut(s) | 157 |
| BtsI | GCAGTG | 1 cut(s) | 112 |
| BtsIMutI | CAGTG | 1 cut(s) | 112 |
| CfoI | GCGC | 1 cut(s) | 241 |
| CviAII | CATG | 4 cut(s) | 49, 77, 83, 176 |
| DraIII | CACNNNGTG | 1 cut(s) | 86 |
| DriI | GACNNNNNGTC | 1 cut(s) | 98 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 98 |
| FaeI | CATG | 4 cut(s) | 52, 80, 86, 179 |
| FaiI | YATR | 8 cut(s) | 50, 60, 66, 68, 78, 84, 126, 177 |
| FatI | CATG | 4 cut(s) | 48, 76, 82, 175 |
| FokI | GGATG | 1 cut(s) | 164 |
| GlaI | GCGC | 1 cut(s) | 240 |
| HhaI | GCGC | 1 cut(s) | 241 |
| Hin1II | CATG | 4 cut(s) | 52, 80, 86, 179 |
| Hin6I | GCGC | 1 cut(s) | 239 |
| HinP1I | GCGC | 1 cut(s) | 239 |
| HphI | GGTGA | 1 cut(s) | 98 |
| Hpy166II | GTNNAC | 2 cut(s) | 188, 253 |
| Hpy8I | GTNNAC | 2 cut(s) | 188, 253 |
| HpyAV | CCTTC | 1 cut(s) | 113 |
| HpyCH4III | ACNGT | 1 cut(s) | 185 |
| HpyCH4IV | ACGT | 1 cut(s) | 249 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 80, 188 |
| HpySE526I | ACGT | 1 cut(s) | 249 |
| Hsp92II | CATG | 4 cut(s) | 52, 80, 86, 179 |
| HspAI | GCGC | 1 cut(s) | 239 |
| MaeII | ACGT | 1 cut(s) | 249 |
| MaeIII | GTNAC | 1 cut(s) | 179 |
| MboII | GAAGA | 4 cut(s) | 43, 122, 176, 179 |
| MhlI | GDGCHC | 1 cut(s) | 190 |
| MluCI | AATT | 1 cut(s) | 61 |
| MslI | CAYNNNNRTG | 1 cut(s) | 81 |
| Mva1269I | GAATGC | 1 cut(s) | 241 |
| MvnI | CGCG | 1 cut(s) | 241 |
| NlaIII | CATG | 4 cut(s) | 52, 80, 86, 179 |
| NmuCI | GTSAC | 1 cut(s) | 179 |
| NspI | RCATGY | 1 cut(s) | 80 |
| PctI | GAATGC | 1 cut(s) | 241 |
| RseI | CAYNNNNRTG | 1 cut(s) | 81 |
| SduI | GDGCHC | 1 cut(s) | 190 |
| SetI | ASST | 3 cut(s) | 10, 124, 252 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 81 |
| Sse9I | AATT | 1 cut(s) | 61 |
| SsiI | CCGC | 1 cut(s) | 103 |
| TaaI | ACNGT | 1 cut(s) | 185 |
| TaiI | ACGT | 1 cut(s) | 252 |
| TasI | AATT | 1 cut(s) | 61 |
| TscAI | CASTG | 1 cut(s) | 112 |
| TseFI | GTSAC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 2 cut(s) | 47, 248 |
| TspGWI | ACGGA | 1 cut(s) | 85 |
| TspRI | CASTG | 1 cut(s) | 112 |
| VneI | GTGCAC | 1 cut(s) | 186 |
| XceI | RCATGY | 1 cut(s) | 80 |