Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017421

Physical Location & Seq

Genomic Coordinates Forward (+)

6341759 .. 6343549

Gene Structure 1791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29045

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAAAAATCCTAAATGCCGAAATTTACCCTTCCAAGCTGAAACAATTTCAGCTGAACCATTCCTTAACCCTACGCTCATATCTTCCTCGTCACTGTTCCCCATCTCTCTCCCTCATCACACTCGCACCATCAGAAGCTCCCTTGCTCCCCCATCTCTCTCCCTCATCACACCCGCACCGCAGCATCAGAAGCTGCTCCCTCACCGCCGCATCCTCGCAGCTCCCCGTCACCGCCGCATCGTCGCTGCTCCCCATCACAGACGTATCAGCACGCAAGCATCTCTCTCCCTCACATCGTCGCTGCTCCACTTCACCGCTCCCCGTCACCGCTCCCTTTCTCCGTCCGTCATCAGAGACCGCAGCCCCGACATCTATCTACACATCCGTGTGTCCCTCGTCACAGATCGATCTCCGACGCAAGTTCCCTGTCACCGGTCCCCGTCACCTCTCCCACAGATCGATCTCTCCCTCGCTTCAATCTACCCATCTCTCTGTCCCTCATCACAGATGGCAAAAGAGTCGGCTGTTTGGAACGACGTTTTAGTTGATGTATTTTGTGACATATGTATCAAAGAGGTGGATAACAATAATCGTCCGCATACTCATTTTAATCCGGTGGGATGGAAGAATATAAAGGACATGCAAGGTTATTCATTTCAGAAGCAAGTGAAGATTGTCATTGCCACCATGACACTTCATAATTATATACGGAGACATGCAGATCGTGATAGACATTTTGTCCGCAGTGAAGAAAGAGAAGGTTATGGGTCAAGTGGTGGGATAGAGATGGATGATGATGTAGAAGAAGAAGAATATCATGGTCATGGTGCACAAGAAATGGAAACAATAAGAAATAACATTACTCAAAGTTTGATGAGTGCGCGTAATAACGGGAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

300

Amino Acids

33.96

Weight (kDa)

9.32

Isoelectric Point (pI)

70.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017421)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0145511 RchiOBHm_Chr2g0162641 RchiOBHm_Chr4g0406001 RchiOBHm_Chr5g0009581 RchiOBHm_Chr7g0231491 RchiOBHm_Chr7g0242041
rosa_roxburghii	Rroxscaffold_3G00224770 Rroxscaffold_3G00239460 Rroxscaffold_3G00254770 Rroxscaffold_5G00363820
rosa_samantha	Rh2AG173700 Rh2BG181300 Rh2DG179900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	317, 330
AccII	CGCG	1 cut(s)	883
AcsI	RAATTY	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	432
AgeI	ACCGGT	1 cut(s)	432
AgsI	TTSAA	1 cut(s)	477
AhdI	GACNNNNNGTC	1 cut(s)	737
AleI	CACNNNNGTG	1 cut(s)	384
AluBI	AGCT	5 cut(s)	38, 53, 138, 193, 221
AluI	AGCT	5 cut(s)	38, 53, 138, 193, 221
Alw21I	GWGCWC	1 cut(s)	832
Alw26I	GTCTC	2 cut(s)	348, 706
Alw44I	GTGCAC	1 cut(s)	828
AlwNI	CAGNNNCTG	1 cut(s)	193
ApaLI	GTGCAC	1 cut(s)	828
ApeKI	GCWGC	6 cut(s)	181, 193, 218, 245, 301, 360
ApoI	RAATTY	1 cut(s)	22
AsiGI	ACCGGT	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	883
AspS9I	GGNCC	1 cut(s)	435
AsuHPI	GGTGA	6 cut(s)	194, 221, 304, 317, 422, 435
AvaII	GGWCC	1 cut(s)	435
BaeGI	GKGCMC	1 cut(s)	832
BaeI	ACNNNNGTAYC	4 cut(s)	247, 280, 550, 583
Bbv12I	GWGCWC	1 cut(s)	832
BbvI	GCAGC	6 cut(s)	180, 193, 230, 232, 288, 372
BccI	CCATC	8 cut(s)	110, 137, 160, 261, 493, 502, 615, 781
BcgI	CGANNNNNNTGC	2 cut(s)	501, 535
BcoDI	GTCTC	2 cut(s)	348, 706
BisI	GCNGC	8 cut(s)	182, 194, 208, 219, 235, 246, 302, 361
BlsI	GCNGC	8 cut(s)	183, 195, 209, 220, 236, 247, 303, 362
Bme18I	GGWCC	1 cut(s)	435
BmeRI	GACNNNNNGTC	1 cut(s)	737
BmgT120I	GGNCC	1 cut(s)	435
BmiI	GGNNCC	1 cut(s)	437
BmsI	GCATC	4 cut(s)	193, 219, 246, 287
Bsa29I	ATCGAT	2 cut(s)	406, 459
BsaI	GGTCTC	1 cut(s)	348
BsaWI	WCCGGW	2 cut(s)	432, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
Bse118I	RCCGGY	1 cut(s)	432
Bse3DI	GCAATG	1 cut(s)	678
BseCI	ATCGAT	2 cut(s)	406, 459
BseGI	GGATG	4 cut(s)	210, 381, 626, 796
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseMI	GCAATG	1 cut(s)	678
BseSI	GKGCMC	1 cut(s)	832
BseXI	GCAGC	6 cut(s)	180, 193, 230, 232, 288, 372
Bsh1236I	CGCG	1 cut(s)	883
BshTI	ACCGGT	1 cut(s)	432
BshVI	ATCGAT	2 cut(s)	406, 459
BsiHKAI	GWGCWC	1 cut(s)	832
BsiSI	CCGG	2 cut(s)	433, 614
BslFI	GGGAC	3 cut(s)	376, 421, 480
BslI	CCNNNNNNNGG	1 cut(s)	432
BsmAI	GTCTC	2 cut(s)	348, 706
BsmFI	GGGAC	3 cut(s)	376, 421, 480
Bso31I	GGTCTC	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	832
Bsp143I	GATC	5 cut(s)	403, 407, 456, 460, 721
BspDI	ATCGAT	2 cut(s)	406, 459
BspFNI	CGCG	1 cut(s)	883
BspLI	GGNNCC	1 cut(s)	437
BspTNI	GGTCTC	1 cut(s)	348
BsrBI	CCGCTC	2 cut(s)	317, 330
BsrDI	GCAATG	1 cut(s)	678
BsrFI	RCCGGY	1 cut(s)	432
BssAI	RCCGGY	1 cut(s)	432
BssMI	GATC	5 cut(s)	403, 407, 456, 460, 721
Bst4CI	ACNGT	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	272, 276
BstF5I	GGATG	4 cut(s)	210, 381, 626, 796
BstFNI	CGCG	1 cut(s)	883
BstHHI	GCGC	1 cut(s)	883
BstKTI	GATC	5 cut(s)	406, 410, 459, 463, 724
BstMAI	GTCTC	2 cut(s)	348, 706
BstMBI	GATC	5 cut(s)	403, 407, 456, 460, 721
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNSI	RCATGY	2 cut(s)	643, 719
BstSLI	GKGCMC	1 cut(s)	832
BstUI	CGCG	1 cut(s)	883
BstV1I	GCAGC	6 cut(s)	180, 193, 230, 232, 288, 372
Bsu15I	ATCGAT	2 cut(s)	406, 459
BsuTUI	ATCGAT	2 cut(s)	406, 459
BtsCI	GGATG	4 cut(s)	210, 381, 626, 796
BtsI	GCAGTG	1 cut(s)	751
BtsIMutI	CAGTG	2 cut(s)	92, 751
Cac8I	GCNNGC	2 cut(s)	272, 276
CaiI	CAGNNNCTG	1 cut(s)	193
CfoI	GCGC	1 cut(s)	883
Cfr10I	RCCGGY	1 cut(s)	432
Cfr13I	GGNCC	1 cut(s)	435
ClaI	ATCGAT	2 cut(s)	406, 459
CseI	GACGC	1 cut(s)	424
CspAI	ACCGGT	1 cut(s)	432
CviAII	CATG	5 cut(s)	640, 688, 716, 818, 824
CviJI	RGCY	7 cut(s)	38, 53, 138, 193, 221, 363, 524
CviKI_1	RGCY	7 cut(s)	38, 53, 138, 193, 221, 363, 524
DpnI	GATC	5 cut(s)	405, 409, 458, 462, 723
DpnII	GATC	5 cut(s)	403, 407, 456, 460, 721
DriI	GACNNNNNGTC	1 cut(s)	737
Eam1105I	GACNNNNNGTC	1 cut(s)	737
Eco31I	GGTCTC	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	435
FaeI	CATG	5 cut(s)	643, 691, 719, 821, 827
FaqI	GGGAC	3 cut(s)	376, 421, 480
FatI	CATG	5 cut(s)	639, 687, 715, 817, 823
FauI	CCCGC	1 cut(s)	181
FauNDI	CATATG	1 cut(s)	563
Fnu4HI	GCNGC	8 cut(s)	182, 194, 208, 219, 235, 246, 302, 361
FokI	GGATG	4 cut(s)	197, 368, 633, 803
Fsp4HI	GCNGC	8 cut(s)	182, 194, 208, 219, 235, 246, 302, 361
GlaI	GCGC	1 cut(s)	882
GluI	GCNGC	8 cut(s)	182, 194, 208, 219, 235, 246, 302, 361
HapII	CCGG	2 cut(s)	433, 614
HgaI	GACGC	1 cut(s)	424
HhaI	GCGC	1 cut(s)	883
Hin1II	CATG	5 cut(s)	643, 691, 719, 821, 827
Hin6I	GCGC	1 cut(s)	881
HinP1I	GCGC	1 cut(s)	881
HinfI	GANTC	1 cut(s)	518
HpaII	CCGG	2 cut(s)	433, 614
HphI	GGTGA	6 cut(s)	194, 221, 304, 317, 422, 435
Hpy166II	GTNNAC	1 cut(s)	830
Hpy188I	TCNGA	5 cut(s)	134, 189, 353, 414, 660
Hpy188III	TCNNGA	1 cut(s)	725
Hpy8I	GTNNAC	1 cut(s)	830
Hpy99I	CGWCG	4 cut(s)	245, 301, 418, 539
HpyAV	CCTTC	2 cut(s)	40, 752
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4IV	ACGT	2 cut(s)	262, 537
HpyCH4V	TGCA	3 cut(s)	643, 719, 830
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpySE526I	ACGT	2 cut(s)	262, 537
Hsp92II	CATG	5 cut(s)	643, 691, 719, 821, 827
HspAI	GCGC	1 cut(s)	881
Kzo9I	GATC	5 cut(s)	403, 407, 456, 460, 721
LmnI	GCTCC	8 cut(s)	143, 151, 201, 226, 253, 309, 322, 335
LpnPI	CCDG	3 cut(s)	439, 446, 627
Lsp1109I	GCAGC	6 cut(s)	180, 193, 230, 232, 288, 372
LweI	GCATC	4 cut(s)	193, 219, 246, 287
MaeII	ACGT	2 cut(s)	262, 537
MaeIII	GTNAC	7 cut(s)	90, 227, 323, 397, 428, 441, 557
MalI	GATC	5 cut(s)	405, 409, 458, 462, 723
MbiI	CCGCTC	2 cut(s)	317, 330
MboI	GATC	5 cut(s)	403, 407, 456, 460, 721
MboII	GAAGA	7 cut(s)	75, 637, 682, 761, 815, 818, 821
MhlI	GDGCHC	1 cut(s)	832
MluCI	AATT	3 cut(s)	22, 45, 700
MlyI	GAGTC	1 cut(s)	527
MmeI	TCCRAC	1 cut(s)	437
MseI	TTAA	2 cut(s)	66, 609
MslI	CAYNNNNRTG	3 cut(s)	384, 386, 822
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	2 cut(s)	433, 614
MvnI	CGCG	1 cut(s)	883
MwoI	GCNNNNNNNGC	1 cut(s)	190
NdeI	CATATG	1 cut(s)	563
NdeII	GATC	5 cut(s)	403, 407, 456, 460, 721
NlaIII	CATG	5 cut(s)	643, 691, 719, 821, 827
NlaIV	GGNNCC	1 cut(s)	437
NmuCI	GTSAC	7 cut(s)	90, 227, 323, 397, 428, 441, 557
NspI	RCATGY	2 cut(s)	643, 719
OliI	CACNNNNGTG	1 cut(s)	384
PinAI	ACCGGT	1 cut(s)	432
PkrI	GCNGC	8 cut(s)	183, 195, 209, 220, 236, 247, 303, 362
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
PspN4I	GGNNCC	1 cut(s)	437
PspPI	GGNCC	1 cut(s)	435
PstNI	CAGNNNCTG	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	53
RseI	CAYNNNNRTG	3 cut(s)	384, 386, 822
SaqAI	TTAA	2 cut(s)	66, 609
SatI	GCNGC	8 cut(s)	182, 194, 208, 219, 235, 246, 302, 361
Sau3AI	GATC	5 cut(s)	403, 407, 456, 460, 721
Sau96I	GGNCC	1 cut(s)	435
SchI	GAGTC	1 cut(s)	527
SduI	GDGCHC	1 cut(s)	832
SfaNI	GCATC	4 cut(s)	193, 219, 246, 287
SinI	GGWCC	1 cut(s)	435
SmiMI	CAYNNNNRTG	3 cut(s)	384, 386, 822
Sse9I	AATT	3 cut(s)	22, 45, 700
SspI	AATATT	1 cut(s)	898
TaaI	ACNGT	1 cut(s)	96
TaiI	ACGT	2 cut(s)	265, 540
TaqI	TCGA	2 cut(s)	406, 459
TasI	AATT	3 cut(s)	22, 45, 700
TauI	GCSGC	2 cut(s)	210, 237
Tru1I	TTAA	2 cut(s)	66, 609
Tru9I	TTAA	2 cut(s)	66, 609
TscAI	CASTG	2 cut(s)	99, 751
TseFI	GTSAC	7 cut(s)	90, 227, 323, 397, 428, 441, 557
TseI	GCWGC	6 cut(s)	181, 193, 218, 245, 301, 360
Tsp45I	GTSAC	7 cut(s)	90, 227, 323, 397, 428, 441, 557
TspDTI	ATGAA	3 cut(s)	17, 642, 686
TspGWI	ACGGA	4 cut(s)	330, 334, 374, 724
TspRI	CASTG	2 cut(s)	99, 751
VneI	GTGCAC	1 cut(s)	828
VpaK11BI	GGWCC	1 cut(s)	435
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	2 cut(s)	643, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.