Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0017421

Physical Location & Seq

Genomic Coordinates Reverse (-)

45122582 .. 45126483

Gene Structure 3902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00363820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAATAGGCCAAGCTTCGTCAAGAAATCGATCACGAAGATGAAAACACTGCTGGTCTTTTGGGCATGTTCAATATACTTGGAGGCAGTTGCAATTATTCCACAATTAGTTTTGCGACAACGAAGTGGAAATGTGGACAATTTGACAGGGCAGTATGTTTTCTTTCTGGGCGAAGACAGTTCCATTTTGCTGATCAACCAAGATGCTTCTCCCATAACTGAAATATGCGTCATTCTAACCATGACACTTCATAATTATATACGAAGACATGCACATCATGATAGTCATTTTGTTCACGGTGAAGAAAGAGAAGGTGATGGGTCAAGTCGTGGGATAGAGATGGATGATGATGTAGAAGAAGAATATCATGGTCATGGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005801 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

127

Amino Acids

14.41

Weight (kDa)

5.51

Isoelectric Point (pI)

53.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ER_lumen_recept	PF00810	13 - 58	2.1e-13	ER lumen protein retaining receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017421)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0145511 RchiOBHm_Chr2g0162641 RchiOBHm_Chr4g0406001 RchiOBHm_Chr5g0009581 RchiOBHm_Chr7g0231491 RchiOBHm_Chr7g0242041
rosa_roxburghii	Rroxscaffold_3G00224770 Rroxscaffold_3G00239460 Rroxscaffold_3G00254770 Rroxscaffold_5G00363820
rosa_samantha	Rh2AG173700 Rh2BG181300 Rh2DG179900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	72
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
AoxI	GGCC	1 cut(s)	8
AsuHPI	GGTGA	2 cut(s)	311, 326
BbsI	GAAGAC	2 cut(s)	180, 271
BccI	CCATC	2 cut(s)	311, 334
BclI	TGATCA	1 cut(s)	192
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	2 cut(s)	180, 271
Bsa29I	ATCGAT	1 cut(s)	29
BseCI	ATCGAT	1 cut(s)	29
BseGI	GGATG	1 cut(s)	349
BshFI	GGCC	1 cut(s)	10
BshVI	ATCGAT	1 cut(s)	29
BsnI	GGCC	1 cut(s)	10
Bsp143I	GATC	2 cut(s)	30, 192
BspANI	GGCC	1 cut(s)	10
BspDI	ATCGAT	1 cut(s)	29
BspHI	TCATGA	1 cut(s)	277
BssMI	GATC	2 cut(s)	30, 192
Bst4CI	ACNGT	2 cut(s)	179, 299
BstF5I	GGATG	1 cut(s)	349
BstKTI	GATC	2 cut(s)	33, 195
BstMBI	GATC	2 cut(s)	30, 192
BstNSI	RCATGY	2 cut(s)	69, 272
BstV2I	GAAGAC	2 cut(s)	180, 271
Bsu15I	ATCGAT	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	10
BsuTUI	ATCGAT	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	349
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	47
CciI	TCATGA	1 cut(s)	277
ClaI	ATCGAT	1 cut(s)	29
CseI	GACGC	1 cut(s)	217
CviAII	CATG	6 cut(s)	66, 241, 269, 278, 368, 374
CviJI	RGCY	2 cut(s)	10, 15
CviKI_1	RGCY	2 cut(s)	10, 15
DpnI	GATC	2 cut(s)	32, 194
DpnII	GATC	2 cut(s)	30, 192
FaeI	CATG	6 cut(s)	69, 244, 272, 281, 371, 377
FatI	CATG	6 cut(s)	65, 240, 268, 277, 367, 373
FbaI	TGATCA	1 cut(s)	192
FokI	GGATG	1 cut(s)	356
HaeIII	GGCC	1 cut(s)	10
HgaI	GACGC	1 cut(s)	217
Hin1II	CATG	6 cut(s)	69, 244, 272, 281, 371, 377
HindIII	AAGCTT	1 cut(s)	13
HphI	GGTGA	2 cut(s)	311, 326
Hpy166II	GTNNAC	2 cut(s)	136, 295
Hpy188III	TCNNGA	3 cut(s)	22, 34, 278
Hpy8I	GTNNAC	2 cut(s)	136, 295
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	2 cut(s)	179, 299
HpyCH4V	TGCA	3 cut(s)	92, 272, 380
Hsp92II	CATG	6 cut(s)	69, 244, 272, 281, 371, 377
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	30, 192
LpnPI	CCDG	3 cut(s)	38, 132, 152
LweI	GCATC	1 cut(s)	193
MalI	GATC	2 cut(s)	32, 194
MboI	GATC	2 cut(s)	30, 192
MboII	GAAGA	6 cut(s)	49, 185, 276, 314, 368, 371
MluCI	AATT	4 cut(s)	93, 104, 139, 253
MnlI	CCTC	1 cut(s)	76
MslI	CAYNNNNRTG	2 cut(s)	38, 372
NdeII	GATC	2 cut(s)	30, 192
NlaIII	CATG	6 cut(s)	69, 244, 272, 281, 371, 377
NspI	RCATGY	2 cut(s)	69, 272
PagI	TCATGA	1 cut(s)	277
RseI	CAYNNNNRTG	2 cut(s)	38, 372
Sau3AI	GATC	2 cut(s)	30, 192
SetI	ASST	2 cut(s)	17, 316
SfaNI	GCATC	1 cut(s)	193
SmiMI	CAYNNNNRTG	2 cut(s)	38, 372
Sse9I	AATT	4 cut(s)	93, 104, 139, 253
TaaI	ACNGT	2 cut(s)	179, 299
TaqI	TCGA	1 cut(s)	29
TasI	AATT	4 cut(s)	93, 104, 139, 253
TscAI	CASTG	1 cut(s)	54
TspDTI	ATGAA	3 cut(s)	17, 56, 239
TspRI	CASTG	1 cut(s)	54
XceI	RCATGY	2 cut(s)	69, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.