Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0017421

Physical Location & Seq

Genomic Coordinates Reverse (-)

15869161 .. 15871253

Gene Structure 2093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG179900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAAAAATCCTAAATGCCGAAATTTACCATTCCAAGCTGAAACAATTTCAGCTGAACCATTCGTTAACCCTACGCTCATATCTTCCTCGTCACTGTTCCCCATCTCTCTCCCTCTTCACACCCGCACCGCAGCATCAGAAGCTGCACCCTCACCGCCGCATCCTCGCAGCTCCCCGTCACCGCCGCATCGTCGCTGCTCCCCATCACAGACGTATCAGCACGCAAGCATCTCTCTCCCTCACATCATCGCTGCTCCCCTTCACCGCTCCCCATCTTCGTCCGTCATCAGAGACCGCAGCCCCGACGTCGATCTACACATCCGTGTGTCCCTCGTCACAGATCGATCTCCGACGCAAGCTCCCCATCACCGTTCCCACAGATCGATCTCTCTCCCTCATCGATCTACCCATCTCTCTGTCGCTCATCACAGGTTCGGTTCTTATTGTGATAGACAGCTTGTACTTTGGTTAGCTTGGTTTTTGGTTCATGAATCGGAGATAAGGTTGCTGCAAATAGGCATGAGTGATGATGATGATGATTTGTTGTTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.59

Weight (kDa)

9.06

Isoelectric Point (pI)

84.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017421)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0145511 RchiOBHm_Chr2g0162641 RchiOBHm_Chr4g0406001 RchiOBHm_Chr5g0009581 RchiOBHm_Chr7g0231491 RchiOBHm_Chr7g0242041
rosa_roxburghii	Rroxscaffold_3G00224770 Rroxscaffold_3G00239460 Rroxscaffold_3G00254770 Rroxscaffold_5G00363820
rosa_samantha	Rh2AG173700 Rh2BG181300 Rh2DG179900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	309
AccBSI	CCGCTC	1 cut(s)	267
AciI	CCGC	8 cut(s)	124, 129, 155, 158, 182, 185, 265, 295
AcsI	RAATTY	1 cut(s)	22
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	1 cut(s)	462
AleI	CACNNNNGTG	1 cut(s)	321
AluBI	AGCT	7 cut(s)	38, 53, 143, 171, 359, 457, 473
AluI	AGCT	7 cut(s)	38, 53, 143, 171, 359, 457, 473
Alw26I	GTCTC	1 cut(s)	285
AlwNI	CAGNNNCTG	1 cut(s)	143
ApeKI	GCWGC	7 cut(s)	131, 143, 168, 195, 251, 297, 508
ApoI	RAATTY	1 cut(s)	22
AsuHPI	GGTGA	4 cut(s)	144, 171, 254, 359
BaeI	ACNNNNGTAYC	2 cut(s)	197, 230
BbvI	GCAGC	7 cut(s)	130, 143, 180, 182, 238, 309, 495
BccI	CCATC	5 cut(s)	110, 211, 280, 372, 417
BcoDI	GTCTC	1 cut(s)	285
BisI	GCNGC	9 cut(s)	132, 144, 158, 169, 185, 196, 252, 298, 509
BlsI	GCNGC	9 cut(s)	133, 145, 159, 170, 186, 197, 253, 299, 510
BmsI	GCATC	4 cut(s)	143, 169, 196, 237
Bsa29I	ATCGAT	3 cut(s)	343, 383, 400
BsaHI	GRCGYC	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	285
BsaXI	ACNNNNNCTCC	4 cut(s)	343, 373, 488, 518
BseCI	ATCGAT	3 cut(s)	343, 383, 400
BseGI	GGATG	2 cut(s)	160, 318
BseXI	GCAGC	7 cut(s)	130, 143, 180, 182, 238, 309, 495
BsgI	GTGCAG	1 cut(s)	129
BshVI	ATCGAT	3 cut(s)	343, 383, 400
BslFI	GGGAC	1 cut(s)	313
BsmAI	GTCTC	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	313
Bso31I	GGTCTC	1 cut(s)	285
Bsp143I	GATC	6 cut(s)	310, 340, 344, 380, 384, 401
BspACI	CCGC	8 cut(s)	124, 129, 155, 158, 182, 185, 265, 295
BspDI	ATCGAT	3 cut(s)	343, 383, 400
BspHI	TCATGA	1 cut(s)	487
BspTNI	GGTCTC	1 cut(s)	285
BsrBI	CCGCTC	1 cut(s)	267
BssMI	GATC	6 cut(s)	310, 340, 344, 380, 384, 401
BssNI	GRCGYC	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	96, 371
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	306
BstC8I	GCNNGC	3 cut(s)	222, 226, 357
BstF5I	GGATG	2 cut(s)	160, 318
BstKTI	GATC	6 cut(s)	313, 343, 347, 383, 387, 404
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	6 cut(s)	310, 340, 344, 380, 384, 401
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstV1I	GCAGC	7 cut(s)	130, 143, 180, 182, 238, 309, 495
Bsu15I	ATCGAT	3 cut(s)	343, 383, 400
BsuTUI	ATCGAT	3 cut(s)	343, 383, 400
BtgZI	GCGATG	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	160, 318
BtsIMutI	CAGTG	1 cut(s)	92
Cac8I	GCNNGC	3 cut(s)	222, 226, 357
CaiI	CAGNNNCTG	1 cut(s)	143
CciI	TCATGA	1 cut(s)	487
ClaI	ATCGAT	3 cut(s)	343, 383, 400
CseI	GACGC	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	461
CviAII	CATG	2 cut(s)	488, 520
CviJI	RGCY	8 cut(s)	38, 53, 143, 171, 300, 359, 457, 473
CviKI_1	RGCY	8 cut(s)	38, 53, 143, 171, 300, 359, 457, 473
CviQI	GTAC	1 cut(s)	461
DpnI	GATC	6 cut(s)	312, 342, 346, 382, 386, 403
DpnII	GATC	6 cut(s)	310, 340, 344, 380, 384, 401
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	285
FaeI	CATG	2 cut(s)	491, 523
FaiI	YATR	3 cut(s)	80, 489, 521
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	2 cut(s)	487, 519
FauI	CCCGC	1 cut(s)	131
Fnu4HI	GCNGC	9 cut(s)	132, 144, 158, 169, 185, 196, 252, 298, 509
FokI	GGATG	2 cut(s)	147, 305
Fsp4HI	GCNGC	9 cut(s)	132, 144, 158, 169, 185, 196, 252, 298, 509
GluI	GCNGC	9 cut(s)	132, 144, 158, 169, 185, 196, 252, 298, 509
HgaI	GACGC	1 cut(s)	361
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	491, 523
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	491
HpaI	GTTAAC	1 cut(s)	67
HphI	GGTGA	4 cut(s)	144, 171, 254, 359
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	4 cut(s)	139, 290, 351, 496
Hpy188III	TCNNGA	1 cut(s)	488
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	4 cut(s)	195, 308, 311, 355
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	2 cut(s)	96, 371
HpyCH4IV	ACGT	2 cut(s)	212, 306
HpyCH4V	TGCA	2 cut(s)	146, 511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpySE526I	ACGT	2 cut(s)	212, 306
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	491, 523
KspAI	GTTAAC	1 cut(s)	67
Kzo9I	GATC	6 cut(s)	310, 340, 344, 380, 384, 401
LmnI	GCTCC	5 cut(s)	176, 203, 259, 272, 364
LpnPI	CCDG	1 cut(s)	415
Lsp1109I	GCAGC	7 cut(s)	130, 143, 180, 182, 238, 309, 495
LweI	GCATC	4 cut(s)	143, 169, 196, 237
MaeII	ACGT	2 cut(s)	212, 306
MaeIII	GTNAC	3 cut(s)	90, 177, 334
MalI	GATC	6 cut(s)	312, 342, 346, 382, 386, 403
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	6 cut(s)	310, 340, 344, 380, 384, 401
MboII	GAAGA	3 cut(s)	75, 107, 267
MluCI	AATT	2 cut(s)	22, 45
MmeI	TCCRAC	1 cut(s)	374
MnlI	CCTC	7 cut(s)	97, 123, 160, 174, 249, 341, 405
MseI	TTAA	1 cut(s)	66
MslI	CAYNNNNRTG	2 cut(s)	321, 323
MspA1I	CMGCKG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	6 cut(s)	310, 340, 344, 380, 384, 401
NlaIII	CATG	2 cut(s)	491, 523
NmuCI	GTSAC	3 cut(s)	90, 177, 334
OliI	CACNNNNGTG	1 cut(s)	321
PagI	TCATGA	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	491
PkrI	GCNGC	9 cut(s)	133, 145, 159, 170, 186, 197, 253, 299, 510
PstNI	CAGNNNCTG	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
RseI	CAYNNNNRTG	2 cut(s)	321, 323
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	9 cut(s)	132, 144, 158, 169, 185, 196, 252, 298, 509
Sau3AI	GATC	6 cut(s)	310, 340, 344, 380, 384, 401
SfaNI	GCATC	4 cut(s)	143, 169, 196, 237
SmiMI	CAYNNNNRTG	2 cut(s)	321, 323
Sse9I	AATT	2 cut(s)	22, 45
SsiI	CCGC	8 cut(s)	124, 129, 155, 158, 182, 185, 265, 295
TaaI	ACNGT	2 cut(s)	96, 371
TaiI	ACGT	2 cut(s)	215, 309
TaqI	TCGA	4 cut(s)	309, 343, 383, 400
TasI	AATT	2 cut(s)	22, 45
TatI	WGTACW	1 cut(s)	460
TauI	GCSGC	2 cut(s)	160, 187
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	3 cut(s)	90, 177, 334
TseI	GCWGC	7 cut(s)	131, 143, 168, 195, 251, 297, 508
Tsp45I	GTSAC	3 cut(s)	90, 177, 334
TspDTI	ATGAA	3 cut(s)	17, 476, 504
TspGWI	ACGGA	2 cut(s)	271, 311
TspRI	CASTG	1 cut(s)	99
XapI	RAATTY	1 cut(s)	22
ZraI	GACGTC	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.