Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019408

Physical Location & Seq

Genomic Coordinates Forward (+)

32578055 .. 32579770

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38031

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCAGCTATGCGAGGTCGAAAGGATGAGTGTGGTTCCTGATAGCCTGGGGGATTTGGCGCAACAAGAAGAGGAAACTGTTTCGATCCAGGTACAGAGAATTGGATCTGAGGAGGTGGATGAACCTGTTTTGATCCAGGTCAAGAAGGAGGGATCTAAGGAGGTGGATGAGGCCGAAACGATGAGCGAGGTTCCGAATAGCCTCGCTGAACAACAACTTGAACCTGTTCCGATTCAGGTGAAGAAAGAAGGATCTGATAAGATGGATGAGGCCGAAAGGCTGCAACAGTCTAAGCCTGAGAGGTTAGAGTATAATGAAGGTCCAGTTCCTCGATTCTCTCTGTTAAATTTTGAATTTTCGGATATGAAATGTGAAATGTTGCTCGTGAGATTAGAGTTTAGTTTAGTTTGTGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

139

Amino Acids

15.81

Weight (kDa)

4.28

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0409271
rosa_multiflora	Rmu_sc0001616.1_g000038 Rmu_sc0004469.1_g000008 Rmu_sc0037829.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060930
rosa_samantha	Rh5AG037200 Rh5CG039900 Rh7DG185600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	79, 112, 127, 160, 259
AcsI	RAATTY	2 cut(s)	346, 353
AfaI	GTAC	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	221, 353
AjnI	CCWGG	3 cut(s)	45, 87, 135
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
AlwI	GGATC	5 cut(s)	79, 112, 127, 160, 259
AoxI	GGCC	2 cut(s)	171, 270
ApeKI	GCWGC	2 cut(s)	4, 280
ApoI	RAATTY	2 cut(s)	346, 353
Asp700I	GAANNNNTTC	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	320
BauI	CACGAG	1 cut(s)	383
BbvI	GCAGC	2 cut(s)	16, 267
BccI	CCATC	1 cut(s)	256
BciT130I	CCWGG	3 cut(s)	47, 89, 137
BisI	GCNGC	2 cut(s)	5, 281
BlsI	GCNGC	2 cut(s)	6, 282
Bme1390I	CCNGG	3 cut(s)	47, 89, 137
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	2 cut(s)	36, 192
BmrFI	CCNGG	3 cut(s)	47, 89, 137
BsaJI	CCNNGG	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	323
BseBI	CCWGG	3 cut(s)	47, 89, 137
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	4 cut(s)	30, 124, 172, 271
BseMII	CTCAG	2 cut(s)	99, 288
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	16, 267
BshFI	GGCC	2 cut(s)	173, 272
BsnI	GGCC	2 cut(s)	173, 272
Bsp143I	GATC	5 cut(s)	84, 104, 132, 152, 251
BspANI	GGCC	2 cut(s)	173, 272
BspCNI	CTCAG	2 cut(s)	100, 289
BspLI	GGNNCC	2 cut(s)	36, 192
BspPI	GGATC	5 cut(s)	79, 112, 127, 160, 259
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	5 cut(s)	84, 104, 132, 152, 251
BssSI	CACGAG	1 cut(s)	383
Bst2BI	CACGAG	1 cut(s)	383
Bst2UI	CCWGG	3 cut(s)	47, 89, 137
Bst4CI	ACNGT	2 cut(s)	79, 288
Bst6I	CTCTTC	1 cut(s)	63
BstDEI	CTNAG	4 cut(s)	108, 156, 291, 297
BstF5I	GGATG	4 cut(s)	30, 124, 172, 271
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	5 cut(s)	87, 107, 135, 155, 254
BstMBI	GATC	5 cut(s)	84, 104, 132, 152, 251
BstNI	CCWGG	3 cut(s)	47, 89, 137
BstSCI	CCNGG	3 cut(s)	45, 87, 135
BstV1I	GCAGC	2 cut(s)	16, 267
BstX2I	RGATCY	3 cut(s)	104, 152, 251
BstYI	RGATCY	3 cut(s)	104, 152, 251
BsuRI	GGCC	2 cut(s)	173, 272
BtsCI	GGATG	4 cut(s)	30, 124, 172, 271
CfoI	GCGC	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	92
CviJI	RGCY	7 cut(s)	7, 45, 173, 201, 272, 280, 295
CviKI_1	RGCY	7 cut(s)	7, 45, 173, 201, 272, 280, 295
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	4 cut(s)	108, 156, 291, 297
DpnI	GATC	5 cut(s)	86, 106, 134, 154, 253
DpnII	GATC	5 cut(s)	84, 104, 132, 152, 251
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	320
EcoRII	CCWGG	3 cut(s)	45, 87, 135
FaiI	YATR	3 cut(s)	10, 312, 365
Fnu4HI	GCNGC	2 cut(s)	5, 281
FokI	GGATG	4 cut(s)	37, 131, 179, 278
Fsp4HI	GCNGC	2 cut(s)	5, 281
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	2 cut(s)	5, 281
HaeIII	GGCC	2 cut(s)	173, 272
HhaI	GCGC	1 cut(s)	61
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HinfI	GANTC	2 cut(s)	232, 333
HphI	GGTGA	1 cut(s)	250
Hpy188I	TCNGA	5 cut(s)	109, 195, 231, 256, 361
Hpy188III	TCNNGA	3 cut(s)	38, 142, 385
HpyAV	CCTTC	3 cut(s)	139, 242, 311
HpyCH4III	ACNGT	2 cut(s)	79, 288
HpyCH4V	TGCA	2 cut(s)	4, 283
HpyF3I	CTNAG	4 cut(s)	108, 156, 291, 297
HspAI	GCGC	1 cut(s)	59
Kzo9I	GATC	5 cut(s)	84, 104, 132, 152, 251
Lsp1109I	GCAGC	2 cut(s)	16, 267
MalI	GATC	5 cut(s)	86, 106, 134, 154, 253
MboI	GATC	5 cut(s)	84, 104, 132, 152, 251
MboII	GAAGA	2 cut(s)	80, 253
MflI	RGATCY	3 cut(s)	104, 152, 251
MluCI	AATT	3 cut(s)	99, 346, 353
MroXI	GAANNNNTTC	1 cut(s)	225
MseI	TTAA	1 cut(s)	344
MspR9I	CCNGG	3 cut(s)	47, 89, 137
MvaI	CCWGG	3 cut(s)	47, 89, 137
NdeII	GATC	5 cut(s)	84, 104, 132, 152, 251
NlaIV	GGNNCC	2 cut(s)	36, 192
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	232, 333
PkrI	GCNGC	2 cut(s)	6, 282
Psp6I	CCWGG	3 cut(s)	45, 87, 135
PspGI	CCWGG	3 cut(s)	45, 87, 135
PspN4I	GGNNCC	2 cut(s)	36, 192
PspPI	GGNCC	1 cut(s)	320
PsuI	RGATCY	3 cut(s)	104, 152, 251
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	2 cut(s)	5, 281
Sau3AI	GATC	5 cut(s)	84, 104, 132, 152, 251
Sau96I	GGNCC	1 cut(s)	320
ScrFI	CCNGG	3 cut(s)	47, 89, 137
SinI	GGWCC	1 cut(s)	320
Sse9I	AATT	3 cut(s)	99, 346, 353
StyD4I	CCNGG	3 cut(s)	45, 87, 135
TaaI	ACNGT	2 cut(s)	79, 288
TaqI	TCGA	3 cut(s)	18, 83, 331
TasI	AATT	3 cut(s)	99, 346, 353
TfiI	GAWTC	2 cut(s)	232, 333
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TseI	GCWGC	2 cut(s)	4, 280
TspDTI	ATGAA	3 cut(s)	135, 330, 380
VpaK11BI	GGWCC	1 cut(s)	320
XapI	RAATTY	2 cut(s)	346, 353
XmnI	GAANNNNTTC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.