Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004469.1

Orthogroup ID

OG0019408

Physical Location & Seq

Genomic Coordinates Reverse (-)

14971 .. 15653

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004469.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgacgcaaattggagtggaaagattttcatcaaaatttacgcgcattgccattaacccaacactccacccccaaaacgacatcggggctcgtatttcgactgtcatcaagcaagagtggccagatgaggcatccgatgagcccgaaaatcttcccgtctcgaagattcttagctcgtcgtcgattgatgaagttcctgacacccaggaagagcccgttccgatcaaaataaagcaggagttctccgaggagcccgatcaggctgacacacttgaaggatcgatgcagctaagcgaggacgaaaggatgagtgtggttcctgatagcctgggggatttggcgcaacaagaaggggaaactgtttcgatccaagtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

125

Amino Acids

13.84

Weight (kDa)

4.1

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0409271
rosa_multiflora	Rmu_sc0001616.1_g000038 Rmu_sc0004469.1_g000008 Rmu_sc0037829.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060930
rosa_samantha	Rh5AG037200 Rh5CG039900 Rh7DG185600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	43
AclWI	GGATC	2 cut(s)	286, 361
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	275
AjnI	CCWGG	2 cut(s)	204, 327
AluBI	AGCT	2 cut(s)	174, 289
AluI	AGCT	2 cut(s)	174, 289
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	2 cut(s)	286, 361
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	150
AspLEI	GCGC	2 cut(s)	45, 343
BalI	TGGCCA	1 cut(s)	121
BanII	GRGCYC	4 cut(s)	91, 144, 216, 255
BbvI	GCAGC	1 cut(s)	298
BciT130I	CCWGG	2 cut(s)	206, 329
BcoDI	GTCTC	1 cut(s)	163
BisI	GCNGC	1 cut(s)	287
BlpI	GCTNAGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	288
Bme1390I	CCNGG	2 cut(s)	206, 329
BmiI	GGNNCC	2 cut(s)	252, 318
BmrFI	CCNGG	2 cut(s)	206, 329
BmsI	GCATC	2 cut(s)	140, 273
Bpu1102I	GCTNAGC	1 cut(s)	290
Bsa29I	ATCGAT	1 cut(s)	281
BsaBI	GATNNNNATC	1 cut(s)	28
BsaJI	CCNNGG	3 cut(s)	204, 246, 328
Bse3DI	GCAATG	1 cut(s)	45
Bse8I	GATNNNNATC	1 cut(s)	28
BseBI	CCWGG	2 cut(s)	206, 329
BseCI	ATCGAT	1 cut(s)	281
BseDI	CCNNGG	3 cut(s)	204, 246, 328
BseGI	GGATG	2 cut(s)	131, 312
BseJI	GATNNNNATC	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	45
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	298
Bsh1236I	CGCG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	121
BshVI	ATCGAT	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	121
Bsp1286I	GDGCHC	4 cut(s)	91, 144, 216, 255
Bsp143I	GATC	4 cut(s)	222, 256, 278, 366
Bsp1720I	GCTNAGC	1 cut(s)	290
BspANI	GGCC	1 cut(s)	121
BspDI	ATCGAT	1 cut(s)	281
BspFNI	CGCG	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	252, 318
BspPI	GGATC	2 cut(s)	286, 361
BspQI	GCTCTTC	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	45
BssECI	CCNNGG	3 cut(s)	204, 246, 328
BssMI	GATC	4 cut(s)	222, 256, 278, 366
Bst2UI	CCWGG	2 cut(s)	206, 329
Bst4CI	ACNGT	2 cut(s)	103, 361
Bst6I	CTCTTC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	170, 290
BstF5I	GGATG	2 cut(s)	131, 312
BstFNI	CGCG	1 cut(s)	43
BstHHI	GCGC	2 cut(s)	45, 343
BstKTI	GATC	4 cut(s)	225, 259, 281, 369
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	4 cut(s)	222, 256, 278, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNI	CCWGG	2 cut(s)	206, 329
BstSCI	CCNGG	2 cut(s)	204, 327
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	298
Bsu15I	ATCGAT	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	121
BsuTUI	ATCGAT	1 cut(s)	281
BtsCI	GGATG	2 cut(s)	131, 312
CfoI	GCGC	2 cut(s)	45, 343
ClaI	ATCGAT	1 cut(s)	281
CseI	GACGC	1 cut(s)	13
CviJI	RGCY	9 cut(s)	89, 121, 142, 174, 214, 253, 263, 289, 327
CviKI_1	RGCY	9 cut(s)	89, 121, 142, 174, 214, 253, 263, 289, 327
DdeI	CTNAG	2 cut(s)	170, 290
DpnI	GATC	4 cut(s)	224, 258, 280, 368
DpnII	GATC	4 cut(s)	222, 256, 278, 366
EaeI	YGGCCR	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco24I	GRGCYC	4 cut(s)	91, 144, 216, 255
EcoRII	CCWGG	2 cut(s)	204, 327
EcoT38I	GRGCYC	4 cut(s)	91, 144, 216, 255
Esp3I	CGTCTC	1 cut(s)	163
FaiI	YATR	1 cut(s)	376
Fnu4HI	GCNGC	1 cut(s)	287
FokI	GGATG	2 cut(s)	118, 319
FriOI	GRGCYC	4 cut(s)	91, 144, 216, 255
Fsp4HI	GCNGC	1 cut(s)	287
GlaI	GCGC	2 cut(s)	44, 342
GluI	GCNGC	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	121
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	2 cut(s)	45, 343
Hin6I	GCGC	2 cut(s)	43, 341
HinP1I	GCGC	2 cut(s)	43, 341
HinfI	GANTC	1 cut(s)	166
Hpy188I	TCNGA	3 cut(s)	136, 222, 247
Hpy188III	TCNNGA	3 cut(s)	160, 197, 320
Hpy99I	CGWCG	2 cut(s)	181, 184
HpyAV	CCTTC	2 cut(s)	269, 344
HpyCH4III	ACNGT	2 cut(s)	103, 361
HpyCH4V	TGCA	1 cut(s)	286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	2 cut(s)	170, 290
HspAI	GCGC	2 cut(s)	43, 341
Kzo9I	GATC	4 cut(s)	222, 256, 278, 366
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	9 cut(s)	135, 191, 210, 218, 221, 245, 314, 333, 341
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	2 cut(s)	140, 273
MalI	GATC	4 cut(s)	224, 258, 280, 368
MboI	GATC	4 cut(s)	222, 256, 278, 366
MboII	GAAGA	3 cut(s)	143, 175, 221
MhlI	GDGCHC	4 cut(s)	91, 144, 216, 255
MlsI	TGGCCA	1 cut(s)	121
MluCI	AATT	2 cut(s)	9, 35
MluNI	TGGCCA	1 cut(s)	121
MnlI	CCTC	3 cut(s)	121, 241, 289
Mox20I	TGGCCA	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	121
MseI	TTAA	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	121
MspR9I	CCNGG	2 cut(s)	206, 329
MvaI	CCWGG	2 cut(s)	206, 329
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	118
NdeII	GATC	4 cut(s)	222, 256, 278, 366
NlaIV	GGNNCC	2 cut(s)	252, 318
PciSI	GCTCTTC	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	204, 327
PspGI	CCWGG	2 cut(s)	204, 327
PspN4I	GGNNCC	2 cut(s)	252, 318
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	4 cut(s)	222, 256, 278, 366
ScrFI	CCNGG	2 cut(s)	206, 329
SduI	GDGCHC	4 cut(s)	91, 144, 216, 255
SetI	ASST	2 cut(s)	176, 291
SfaNI	GCATC	2 cut(s)	140, 273
Sse9I	AATT	2 cut(s)	9, 35
StyD4I	CCNGG	2 cut(s)	204, 327
TaaI	ACNGT	2 cut(s)	103, 361
TaqI	TCGA	5 cut(s)	98, 161, 182, 281, 365
TasI	AATT	2 cut(s)	9, 35
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseI	GCWGC	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	18, 204
XapI	RAATTY	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.