Rroxscaffold_1G00060930

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0019408
Physical Location & Seq
Forward (+)
83141309 .. 83143793
2485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00060930.1

Sequence Viewer

Length: 378 bp
ATGTTTCCTCGGCTAAACAAGTCGAACTACTTGCCTTACGAGAAGGACTTAATCTTCGCGGCGGCGTCATGCATCTCATGCGGTTCTAGAAACCGATCGCCTCGCCGCAAATTTTCATCAAAATTTACGCGCATTGCCATTAACCCAACACTCCACCCCCAAAACGACACCGGGGCTCGTATTTCGACCGTCATCAAGCAAGAGTGGCCGGATGAGGCATCCGATGAGGCCGAAAAGCTTCCCGTCTCGAAGATTCTTAGCTCGTCGTCGATTGATGAAGTTCCCGACACCCGGGAGGAGCCCGTTCCGATCAAAATCAAGCAGGAGTTCTCCGAGGAGCCCGATCGGCCGACACACTTGAAGGATCGATGCGGCTAA

Protein Analysis

125

Amino Acids

14.19

Weight (kDa)

7.71

Isoelectric Point (pI)

54.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019408)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0409271
rosa_multiflora Rmu_sc0001616.1_g000038 Rmu_sc0004469.1_g000008 Rmu_sc0037829.1_g000001
rosa_roxburghii Rroxscaffold_1G00060930
rosa_samantha Rh5AG037200 Rh5CG039900 Rh7DG185600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 59, 130
AciI CCGC 5 cut(s) 59, 62, 81, 106, 372
AclWI GGATC 1 cut(s) 372
AcoI YGGCCR 2 cut(s) 206, 347
AcsI RAATTY 2 cut(s) 110, 122
AcyI GRCGYC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 1 cut(s) 361
AluBI AGCT 2 cut(s) 238, 261
AluI AGCT 2 cut(s) 238, 261
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 1 cut(s) 372
Ama87I CYCGRG 1 cut(s) 291
AoxI GGCC 3 cut(s) 206, 228, 347
ApoI RAATTY 2 cut(s) 110, 122
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
Asp700I GAANNNNTTC 1 cut(s) 237
AspLEI GCGC 1 cut(s) 132
AsuC2I CCSGG 3 cut(s) 172, 292, 293
AvaI CYCGRG 1 cut(s) 291
BanII GRGCYC 3 cut(s) 178, 303, 342
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BcnI CCSGG 3 cut(s) 172, 292, 293
BcoDI GTCTC 1 cut(s) 250
BfaI CTAG 1 cut(s) 87
BglI GCCNNNNNGGC 1 cut(s) 346
BisI GCNGC 4 cut(s) 60, 63, 106, 373
BlsI GCNGC 4 cut(s) 61, 64, 107, 374
Bme1390I CCNGG 3 cut(s) 172, 292, 293
BmeT110I CYCGRG 1 cut(s) 291
BmiI GGNNCC 2 cut(s) 300, 339
BmrFI CCNGG 3 cut(s) 172, 292, 293
BmsI GCATC 3 cut(s) 81, 227, 359
BpuMI CCSGG 3 cut(s) 172, 292, 293
Bsa29I ATCGAT 1 cut(s) 367
BsaBI GATNNNNATC 1 cut(s) 314
BsaHI GRCGYC 1 cut(s) 65
BsaJI CCNNGG 4 cut(s) 8, 171, 291, 333
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse3DI GCAATG 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 314
BseCI ATCGAT 1 cut(s) 367
BseDI CCNNGG 4 cut(s) 8, 171, 291, 333
BseGI GGATG 2 cut(s) 217, 218
BseJI GATNNNNATC 1 cut(s) 314
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMI GCAATG 1 cut(s) 132
BseRI GAGGAG 2 cut(s) 311, 350
BseX3I CGGCCG 1 cut(s) 347
Bsh1236I CGCG 2 cut(s) 59, 130
Bsh1285I CGRYCG 4 cut(s) 98, 189, 346, 350
BshFI GGCC 3 cut(s) 208, 230, 349
BshVI ATCGAT 1 cut(s) 367
BsiEI CGRYCG 4 cut(s) 98, 189, 346, 350
BsiHKCI CYCGRG 1 cut(s) 291
BsiSI CCGG 3 cut(s) 171, 209, 292
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 1 cut(s) 250
BsmBI CGTCTC 1 cut(s) 250
BsnI GGCC 3 cut(s) 208, 230, 349
BsoBI CYCGRG 1 cut(s) 291
Bsp1286I GDGCHC 3 cut(s) 178, 303, 342
Bsp143I GATC 4 cut(s) 95, 309, 343, 364
BspACI CCGC 5 cut(s) 59, 62, 81, 106, 372
BspANI GGCC 3 cut(s) 208, 230, 349
BspDI ATCGAT 1 cut(s) 367
BspFNI CGCG 2 cut(s) 59, 130
BspLI GGNNCC 2 cut(s) 300, 339
BspPI GGATC 1 cut(s) 372
BsrDI GCAATG 1 cut(s) 132
BssECI CCNNGG 4 cut(s) 8, 171, 291, 333
BssMI GATC 4 cut(s) 95, 309, 343, 364
BssNI GRCGYC 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 190
BstACI GRCGYC 1 cut(s) 65
BstAPI GCANNNNNTGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 257
BstF5I GGATG 2 cut(s) 217, 218
BstFNI CGCG 2 cut(s) 59, 130
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 4 cut(s) 98, 312, 346, 367
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 4 cut(s) 95, 309, 343, 364
BstMCI CGRYCG 4 cut(s) 98, 189, 346, 350
BstMWI GCNNNNNNNGC 3 cut(s) 78, 205, 346
BstSCI CCNGG 3 cut(s) 170, 290, 291
BstUI CGCG 2 cut(s) 59, 130
BstZI CGGCCG 1 cut(s) 347
Bsu15I ATCGAT 1 cut(s) 367
BsuRI GGCC 3 cut(s) 208, 230, 349
BsuTUI ATCGAT 1 cut(s) 367
BtsCI GGATG 2 cut(s) 217, 218
CfoI GCGC 1 cut(s) 132
Cfr9I CCCGGG 1 cut(s) 291
ClaI ATCGAT 1 cut(s) 367
CseI GACGC 1 cut(s) 54
CviAII CATG 2 cut(s) 69, 78
DdeI CTNAG 1 cut(s) 257
DpnI GATC 4 cut(s) 97, 311, 345, 366
DpnII GATC 4 cut(s) 95, 309, 343, 364
EaeI YGGCCR 2 cut(s) 206, 347
EagI CGGCCG 1 cut(s) 347
EclXI CGGCCG 1 cut(s) 347
Eco24I GRGCYC 3 cut(s) 178, 303, 342
Eco52I CGGCCG 1 cut(s) 347
Eco88I CYCGRG 1 cut(s) 291
EcoT22I ATGCAT 1 cut(s) 74
EcoT38I GRGCYC 3 cut(s) 178, 303, 342
Esp3I CGTCTC 1 cut(s) 250
FaeI CATG 2 cut(s) 72, 81
FaiI YATR 2 cut(s) 70, 79
FatI CATG 2 cut(s) 68, 77
Fnu4HI GCNGC 4 cut(s) 60, 63, 106, 373
FokI GGATG 2 cut(s) 205, 224
FriOI GRGCYC 3 cut(s) 178, 303, 342
Fsp4HI GCNGC 4 cut(s) 60, 63, 106, 373
FspBI CTAG 1 cut(s) 87
GlaI GCGC 1 cut(s) 131
GluI GCNGC 4 cut(s) 60, 63, 106, 373
HaeIII GGCC 3 cut(s) 208, 230, 349
HapII CCGG 3 cut(s) 171, 209, 292
HgaI GACGC 1 cut(s) 54
HhaI GCGC 1 cut(s) 132
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 2 cut(s) 72, 81
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 1 cut(s) 253
HpaII CCGG 3 cut(s) 171, 209, 292
Hpy188I TCNGA 3 cut(s) 223, 309, 334
Hpy188III TCNNGA 3 cut(s) 87, 247, 284
Hpy99I CGWCG 2 cut(s) 268, 271
HpyAV CCTTC 2 cut(s) 37, 355
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 205, 346
HpyF3I CTNAG 1 cut(s) 257
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 2 cut(s) 72, 81
HspAI GCGC 1 cut(s) 130
Kzo9I GATC 4 cut(s) 95, 309, 343, 364
LmnI GCTCC 2 cut(s) 298, 337
LpnPI CCDG 4 cut(s) 184, 222, 305, 308
LweI GCATC 3 cut(s) 81, 227, 359
MaeI CTAG 1 cut(s) 87
MalI GATC 4 cut(s) 97, 311, 345, 366
MboI GATC 4 cut(s) 95, 309, 343, 364
MboII GAAGA 2 cut(s) 46, 262
MhlI GDGCHC 3 cut(s) 178, 303, 342
MluCI AATT 2 cut(s) 110, 122
MnlI CCTC 6 cut(s) 18, 111, 208, 220, 289, 328
Mph1103I ATGCAT 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 237
MseI TTAA 2 cut(s) 50, 141
MspI CCGG 3 cut(s) 171, 209, 292
MspR9I CCNGG 3 cut(s) 172, 292, 293
MvnI CGCG 2 cut(s) 59, 130
MwoI GCNNNNNNNGC 3 cut(s) 78, 205, 346
NciI CCSGG 3 cut(s) 172, 292, 293
NdeII GATC 4 cut(s) 95, 309, 343, 364
NlaIII CATG 2 cut(s) 72, 81
NlaIV GGNNCC 2 cut(s) 300, 339
NsiI ATGCAT 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 253
PkrI GCNGC 4 cut(s) 61, 64, 107, 374
Ple19I CGATCG 2 cut(s) 98, 346
PspN4I GGNNCC 2 cut(s) 300, 339
PvuI CGATCG 2 cut(s) 98, 346
SaqAI TTAA 2 cut(s) 50, 141
SatI GCNGC 4 cut(s) 60, 63, 106, 373
Sau3AI GATC 4 cut(s) 95, 309, 343, 364
ScrFI CCNGG 3 cut(s) 172, 292, 293
SduI GDGCHC 3 cut(s) 178, 303, 342
SetI ASST 2 cut(s) 240, 263
SfaNI GCATC 3 cut(s) 81, 227, 359
SmaI CCCGGG 1 cut(s) 293
Sse9I AATT 2 cut(s) 110, 122
SsiI CCGC 5 cut(s) 59, 62, 81, 106, 372
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 3 cut(s) 170, 290, 291
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 5 cut(s) 23, 185, 248, 269, 367
TasI AATT 2 cut(s) 110, 122
TauI GCSGC 4 cut(s) 62, 65, 108, 375
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 2 cut(s) 50, 141
Tru9I TTAA 2 cut(s) 50, 141
TspDTI ATGAA 2 cut(s) 105, 291
TspMI CCCGGG 1 cut(s) 291
XapI RAATTY 2 cut(s) 110, 122
XbaI TCTAGA 1 cut(s) 86
XmaI CCCGGG 1 cut(s) 291
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.