Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0019408

Physical Location & Seq

Genomic Coordinates Reverse (-)

2582737 .. 2583961

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG039900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCGCATTGCCATTAACCCAACACGCCACCCCCAAAACGACACCGGGGCTCGTATTTCCATAGTCACCAAGCAAGAGTGGCCAGATGAGGCTTCCAATGAGCCCAAAAAGCTTCCTGTCTCGAAGATTCTTTGCTCGTCATCGATTGATCAAGTTCCTGACACCCAGGAGGAGCCTGTTCCGATCAAAATCAAGCAGGAGTTCTCCGAGGAGCCCGATCAGGCTGACACACTTGAAGGATCGATGCAGCTAAGCGAGAGAGTTGGATCTGAGGAGGTGGATGAGGCCGAAACGATGAGCAAGGTTCCGAATAGCCTCGCTGAACAACAACCTGAACCTATTCAGATTCAGGTGAAGAAAGAAGGATCTGATAAGATGGATGAGGCCGAAAGGCTGCAAGAGTCTAAGCCTGAGAGGGAGAATGTGTCATATGAACGCAACGAGGCTAGGCTTGCAGAAAACCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

155

Amino Acids

17.54

Weight (kDa)

4.56

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0409271
rosa_multiflora	Rmu_sc0001616.1_g000038 Rmu_sc0004469.1_g000008 Rmu_sc0037829.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060930
rosa_samantha	Rh5AG037200 Rh5CG039900 Rh7DG185600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AclWI	GGATC	3 cut(s)	247, 274, 373
AcoI	YGGCCR	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	2 cut(s)	112, 250
AluI	AGCT	2 cut(s)	112, 250
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	3 cut(s)	247, 274, 373
AoxI	GGCC	3 cut(s)	80, 285, 384
ApeKI	GCWGC	2 cut(s)	247, 394
Asp700I	GAANNNNTTC	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	6
AsuC2I	CCSGG	1 cut(s)	46
AsuHPI	GGTGA	2 cut(s)	58, 364
BalI	TGGCCA	1 cut(s)	82
BanII	GRGCYC	3 cut(s)	52, 105, 216
BbvI	GCAGC	2 cut(s)	259, 381
BccI	CCATC	1 cut(s)	370
BciT130I	CCWGG	1 cut(s)	167
BclI	TGATCA	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	1 cut(s)	447
BisI	GCNGC	2 cut(s)	248, 395
BlpI	GCTNAGC	1 cut(s)	251
BlsI	GCNGC	2 cut(s)	249, 396
Bme1390I	CCNGG	2 cut(s)	46, 167
BmiI	GGNNCC	3 cut(s)	174, 213, 306
BmrFI	CCNGG	2 cut(s)	46, 167
BmsI	GCATC	1 cut(s)	234
Bpu1102I	GCTNAGC	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	46
Bsa29I	ATCGAT	2 cut(s)	143, 242
BsaBI	GATNNNNATC	1 cut(s)	188
BsaJI	CCNNGG	3 cut(s)	45, 165, 207
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bse3DI	GCAATG	1 cut(s)	6
Bse8I	GATNNNNATC	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	167
BseCI	ATCGAT	2 cut(s)	143, 242
BseDI	CCNNGG	3 cut(s)	45, 165, 207
BseGI	GGATG	2 cut(s)	286, 385
BseJI	GATNNNNATC	1 cut(s)	188
BseMI	GCAATG	1 cut(s)	6
BseMII	CTCAG	2 cut(s)	261, 402
BseRI	GAGGAG	3 cut(s)	185, 224, 287
BseXI	GCAGC	2 cut(s)	259, 381
BshFI	GGCC	3 cut(s)	82, 287, 386
BshVI	ATCGAT	2 cut(s)	143, 242
BsiSI	CCGG	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	124
BsnI	GGCC	3 cut(s)	82, 287, 386
Bsp1286I	GDGCHC	3 cut(s)	52, 105, 216
Bsp143I	GATC	6 cut(s)	148, 183, 217, 239, 266, 365
Bsp1720I	GCTNAGC	1 cut(s)	251
BspANI	GGCC	3 cut(s)	82, 287, 386
BspCNI	CTCAG	2 cut(s)	262, 403
BspDI	ATCGAT	2 cut(s)	143, 242
BspLI	GGNNCC	3 cut(s)	174, 213, 306
BspPI	GGATC	3 cut(s)	247, 274, 373
BsrDI	GCAATG	1 cut(s)	6
BssECI	CCNNGG	3 cut(s)	45, 165, 207
BssMI	GATC	6 cut(s)	148, 183, 217, 239, 266, 365
Bst2UI	CCWGG	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	4 cut(s)	251, 270, 405, 411
BstF5I	GGATG	2 cut(s)	286, 385
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	6 cut(s)	151, 186, 220, 242, 269, 368
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	6 cut(s)	148, 183, 217, 239, 266, 365
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 109, 452
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	44, 165
BstV1I	GCAGC	2 cut(s)	259, 381
BstX2I	RGATCY	2 cut(s)	266, 365
BstYI	RGATCY	2 cut(s)	266, 365
Bsu15I	ATCGAT	2 cut(s)	143, 242
BsuRI	GGCC	3 cut(s)	82, 287, 386
BsuTUI	ATCGAT	2 cut(s)	143, 242
BtsCI	GGATG	2 cut(s)	286, 385
BtsIMutI	CAGTG	1 cut(s)	463
Cac8I	GCNNGC	1 cut(s)	453
CfoI	GCGC	1 cut(s)	6
ClaI	ATCGAT	2 cut(s)	143, 242
DdeI	CTNAG	4 cut(s)	251, 270, 405, 411
DpnI	GATC	6 cut(s)	150, 185, 219, 241, 268, 367
DpnII	GATC	6 cut(s)	148, 183, 217, 239, 266, 365
EaeI	YGGCCR	1 cut(s)	80
Eco24I	GRGCYC	3 cut(s)	52, 105, 216
EcoRII	CCWGG	1 cut(s)	165
EcoT38I	GRGCYC	3 cut(s)	52, 105, 216
FaiI	YATR	3 cut(s)	62, 430, 432
FauNDI	CATATG	1 cut(s)	430
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	2 cut(s)	248, 395
FokI	GGATG	2 cut(s)	293, 392
FriOI	GRGCYC	3 cut(s)	52, 105, 216
Fsp4HI	GCNGC	2 cut(s)	248, 395
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	1 cut(s)	447
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	248, 395
HaeIII	GGCC	3 cut(s)	82, 287, 386
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	3 cut(s)	127, 346, 401
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	2 cut(s)	58, 364
Hpy188I	TCNGA	6 cut(s)	183, 208, 271, 309, 345, 370
Hpy188III	TCNNGA	2 cut(s)	121, 158
HpyAV	CCTTC	2 cut(s)	230, 356
HpyCH4V	TGCA	3 cut(s)	247, 397, 455
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 109, 452
HpyF3I	CTNAG	4 cut(s)	251, 270, 405, 411
HspAI	GCGC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	6 cut(s)	148, 183, 217, 239, 266, 365
LmnI	GCTCC	2 cut(s)	172, 211
Lsp1109I	GCAGC	2 cut(s)	259, 381
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	1 cut(s)	447
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	6 cut(s)	150, 185, 219, 241, 268, 367
MboI	GATC	6 cut(s)	148, 183, 217, 239, 266, 365
MboII	GAAGA	2 cut(s)	136, 367
MflI	RGATCY	2 cut(s)	266, 365
MhlI	GDGCHC	3 cut(s)	52, 105, 216
MlsI	TGGCCA	1 cut(s)	82
MluNI	TGGCCA	1 cut(s)	82
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	1 cut(s)	244
Mox20I	TGGCCA	1 cut(s)	82
MroXI	GAANNNNTTC	1 cut(s)	339
MscI	TGGCCA	1 cut(s)	82
MseI	TTAA	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	82
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	46, 167
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	3 cut(s)	79, 109, 452
NciI	CCSGG	1 cut(s)	46
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	6 cut(s)	148, 183, 217, 239, 266, 365
NlaIV	GGNNCC	3 cut(s)	174, 213, 306
NmuCI	GTSAC	1 cut(s)	64
NsbI	TGCGCA	1 cut(s)	5
PdmI	GAANNNNTTC	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	127, 346
PkrI	GCNGC	2 cut(s)	249, 396
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	3 cut(s)	174, 213, 306
PsuI	RGATCY	2 cut(s)	266, 365
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	2 cut(s)	248, 395
Sau3AI	GATC	6 cut(s)	148, 183, 217, 239, 266, 365
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	2 cut(s)	46, 167
SduI	GDGCHC	3 cut(s)	52, 105, 216
SetI	ASST	7 cut(s)	114, 252, 279, 306, 334, 340, 354
SfaNI	GCATC	1 cut(s)	234
SspMI	CTAG	1 cut(s)	447
StyD4I	CCNGG	2 cut(s)	44, 165
TaqI	TCGA	3 cut(s)	122, 143, 242
TfiI	GAWTC	2 cut(s)	127, 346
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	2 cut(s)	247, 394
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	447
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.