Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037829.1

Orthogroup ID

OG0019408

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 816

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037829.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 352 bp

gaggagcccgttctgatcaaaatcaagctggagttctctgaggagcccgatcaggctgacacacttgaaggatcgatgcagctaagcgaggtcaaaaggatgagtgtggttcctgatagcctgggggatttggcgcaacaagaaggggaaactatttcaatccaggtacagagagttggatctgatgaggtggatgaacctgttttgatccaggtcaagaaggagggatctgaggaggtggatgaggccgaaacgatgagtgagattccgaatagcctcgctgaacaacaacctgaacctgttccgattcaggtgaagaaagaaggatctgataagatggatgaggccgaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

117

Amino Acids

12.92

Weight (kDa)

4.05

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0019408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0409271
rosa_multiflora	Rmu_sc0001616.1_g000038 Rmu_sc0004469.1_g000008 Rmu_sc0037829.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060930
rosa_samantha	Rh5AG037200 Rh5CG039900 Rh7DG185600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	79, 187, 202, 235, 334
AfaI	GTAC	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	68, 159
AjnI	CCWGG	3 cut(s)	120, 162, 210
AluBI	AGCT	2 cut(s)	28, 82
AluI	AGCT	2 cut(s)	28, 82
AlwI	GGATC	5 cut(s)	79, 187, 202, 235, 334
AoxI	GGCC	2 cut(s)	246, 345
ApeKI	GCWGC	1 cut(s)	79
Asp700I	GAANNNNTTC	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	325
BanII	GRGCYC	2 cut(s)	9, 48
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	331
BciT130I	CCWGG	3 cut(s)	122, 164, 212
BclI	TGATCA	1 cut(s)	15
BisI	GCNGC	1 cut(s)	80
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	81
Bme1390I	CCNGG	3 cut(s)	122, 164, 212
BmiI	GGNNCC	3 cut(s)	6, 45, 111
BmrFI	CCNGG	3 cut(s)	122, 164, 212
BmsI	GCATC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	50
Bpu1102I	GCTNAGC	1 cut(s)	83
Bsa29I	ATCGAT	1 cut(s)	74
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	121
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	3 cut(s)	122, 164, 212
BseCI	ATCGAT	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	4 cut(s)	105, 199, 247, 346
BseJI	GATNNNNATC	1 cut(s)	20
BseMII	CTCAG	2 cut(s)	30, 222
BseRI	GAGGAG	3 cut(s)	17, 56, 248
BseXI	GCAGC	1 cut(s)	91
BshFI	GGCC	2 cut(s)	248, 347
BshVI	ATCGAT	1 cut(s)	74
BsnI	GGCC	2 cut(s)	248, 347
Bsp1286I	GDGCHC	2 cut(s)	9, 48
Bsp143I	GATC	7 cut(s)	15, 49, 71, 179, 207, 227, 326
Bsp1720I	GCTNAGC	1 cut(s)	83
BspANI	GGCC	2 cut(s)	248, 347
BspCNI	CTCAG	2 cut(s)	31, 223
BspDI	ATCGAT	1 cut(s)	74
BspLI	GGNNCC	3 cut(s)	6, 45, 111
BspPI	GGATC	5 cut(s)	79, 187, 202, 235, 334
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	7 cut(s)	15, 49, 71, 179, 207, 227, 326
Bst2UI	CCWGG	3 cut(s)	122, 164, 212
BstDEI	CTNAG	3 cut(s)	39, 83, 231
BstF5I	GGATG	4 cut(s)	105, 199, 247, 346
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	7 cut(s)	18, 52, 74, 182, 210, 230, 329
BstMBI	GATC	7 cut(s)	15, 49, 71, 179, 207, 227, 326
BstNI	CCWGG	3 cut(s)	122, 164, 212
BstSCI	CCNGG	3 cut(s)	120, 162, 210
BstV1I	GCAGC	1 cut(s)	91
BstX2I	RGATCY	3 cut(s)	179, 227, 326
BstYI	RGATCY	3 cut(s)	179, 227, 326
Bsu15I	ATCGAT	1 cut(s)	74
BsuRI	GGCC	2 cut(s)	248, 347
BsuTUI	ATCGAT	1 cut(s)	74
BtsCI	GGATG	4 cut(s)	105, 199, 247, 346
CfoI	GCGC	1 cut(s)	136
ClaI	ATCGAT	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	167
CviJI	RGCY	9 cut(s)	7, 28, 46, 56, 82, 120, 248, 276, 347
CviKI_1	RGCY	9 cut(s)	7, 28, 46, 56, 82, 120, 248, 276, 347
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	3 cut(s)	39, 83, 231
DpnI	GATC	7 cut(s)	17, 51, 73, 181, 209, 229, 328
DpnII	GATC	7 cut(s)	15, 49, 71, 179, 207, 227, 326
Eco24I	GRGCYC	2 cut(s)	9, 48
EcoRII	CCWGG	3 cut(s)	120, 162, 210
EcoT38I	GRGCYC	2 cut(s)	9, 48
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	80
FokI	GGATG	3 cut(s)	112, 206, 254
FriOI	GRGCYC	2 cut(s)	9, 48
Fsp4HI	GCNGC	1 cut(s)	80
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	80
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	248, 347
HhaI	GCGC	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	2 cut(s)	265, 307
HphI	GGTGA	1 cut(s)	325
Hpy188I	TCNGA	7 cut(s)	15, 40, 184, 232, 270, 306, 331
Hpy188III	TCNNGA	2 cut(s)	113, 217
HpyAV	CCTTC	4 cut(s)	62, 137, 214, 317
HpyCH4V	TGCA	1 cut(s)	79
HpyF3I	CTNAG	3 cut(s)	39, 83, 231
HspAI	GCGC	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	7 cut(s)	15, 49, 71, 179, 207, 227, 326
LmnI	GCTCC	2 cut(s)	4, 43
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	66
MalI	GATC	7 cut(s)	17, 51, 73, 181, 209, 229, 328
MboI	GATC	7 cut(s)	15, 49, 71, 179, 207, 227, 326
MboII	GAAGA	1 cut(s)	328
MflI	RGATCY	3 cut(s)	179, 227, 326
MhlI	GDGCHC	2 cut(s)	9, 48
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	9 cut(s)	34, 82, 181, 217, 226, 229, 238, 287, 337
MroXI	GAANNNNTTC	1 cut(s)	300
MspR9I	CCNGG	3 cut(s)	122, 164, 212
MvaI	CCWGG	3 cut(s)	122, 164, 212
NdeII	GATC	7 cut(s)	15, 49, 71, 179, 207, 227, 326
NlaIV	GGNNCC	3 cut(s)	6, 45, 111
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	265, 307
PkrI	GCNGC	1 cut(s)	81
Psp6I	CCWGG	3 cut(s)	120, 162, 210
PspGI	CCWGG	3 cut(s)	120, 162, 210
PspN4I	GGNNCC	3 cut(s)	6, 45, 111
PsuI	RGATCY	3 cut(s)	179, 227, 326
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
SatI	GCNGC	1 cut(s)	80
Sau3AI	GATC	7 cut(s)	15, 49, 71, 179, 207, 227, 326
ScrFI	CCNGG	3 cut(s)	122, 164, 212
SduI	GDGCHC	2 cut(s)	9, 48
SfaNI	GCATC	1 cut(s)	66
StyD4I	CCNGG	3 cut(s)	120, 162, 210
TaqI	TCGA	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	265, 307
TseI	GCWGC	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.