Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001616.1

Orthogroup ID

OG0019408

Physical Location & Seq

Genomic Coordinates Forward (+)

190944 .. 191867

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001616.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgattggagaggccaaaattctcataaatacagctgcaagattttcatcaaaatttactcgcattgccattaacccaacattccacccccaaaacgacaccggggctcgtatttcgaccgtcatcaagcaagagtggccgaatgaggcatccgatgagcccgaaaagcttcccatctcgaagattcttagctcgttgtcgattgatgaagttcctgacacccaggaggagcccgttccgatcaaaatcaagcaggagttctccgaggagcccgatcaggctgacacacttgaaggatcgatgcagctaagcgaggtcgaaaggatgagtatggttcctgatagcctgggggatttggcgcaacaagaaggggaaactatttctatccaggtacagagagttggatctgaggaggtggatgaggccgaaacgatgagcgaggttccgaatagcctcgctaaacaacaacctgaacttgttccgattcaggtgaagaaagaaggatctgataagatggatgatctcaggttagatttcggcgagtccaactcgaaactctggaaaatgcaaaacccgccagagctgctattcgctttccggctttcgtactccatccacggtgcacgatcagacgaagcacaaccacaggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

217

Amino Acids

24.22

Weight (kDa)

4.45

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0409271
rosa_multiflora	Rmu_sc0001616.1_g000038 Rmu_sc0004469.1_g000008 Rmu_sc0037829.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060930
rosa_samantha	Rh5AG037200 Rh5CG039900 Rh7DG185600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	575
AclWI	GGATC	3 cut(s)	304, 412, 511
AcoI	YGGCCR	1 cut(s)	137
AcsI	RAATTY	2 cut(s)	18, 53
AfaI	GTAC	2 cut(s)	393, 608
AgsI	TTSAA	1 cut(s)	293
AjnI	CCWGG	3 cut(s)	222, 345, 387
AleI	CACNNNNGTG	1 cut(s)	649
AluBI	AGCT	5 cut(s)	35, 169, 192, 307, 583
AluI	AGCT	5 cut(s)	35, 169, 192, 307, 583
Alw21I	GWGCWC	1 cut(s)	625
Alw44I	GTGCAC	1 cut(s)	621
AlwI	GGATC	3 cut(s)	304, 412, 511
AoxI	GGCC	3 cut(s)	12, 137, 423
ApaLI	GTGCAC	1 cut(s)	621
ApeKI	GCWGC	3 cut(s)	35, 304, 583
ApoI	RAATTY	2 cut(s)	18, 53
Asp700I	GAANNNNTTC	2 cut(s)	168, 477
AspLEI	GCGC	1 cut(s)	361
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	502
BaeGI	GKGCMC	1 cut(s)	625
BanII	GRGCYC	4 cut(s)	109, 162, 234, 273
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	3 cut(s)	22, 316, 570
BccI	CCATC	3 cut(s)	182, 508, 620
BciT130I	CCWGG	3 cut(s)	224, 347, 389
BcnI	CCSGG	1 cut(s)	103
BisI	GCNGC	3 cut(s)	36, 305, 584
BlpI	GCTNAGC	1 cut(s)	308
BlsI	GCNGC	3 cut(s)	37, 306, 585
Bme1390I	CCNGG	4 cut(s)	103, 224, 347, 389
BmiI	GGNNCC	4 cut(s)	231, 270, 336, 444
BmrFI	CCNGG	4 cut(s)	103, 224, 347, 389
BmsI	GCATC	2 cut(s)	158, 291
BplI	GAGNNNNNCTC	2 cut(s)	533, 565
Bpu1102I	GCTNAGC	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	103
Bsa29I	ATCGAT	1 cut(s)	299
BsaBI	GATNNNNATC	2 cut(s)	46, 245
BsaJI	CCNNGG	5 cut(s)	102, 222, 264, 346, 616
Bse3DI	GCAATG	1 cut(s)	63
Bse8I	GATNNNNATC	2 cut(s)	46, 245
BseBI	CCWGG	3 cut(s)	224, 347, 389
BseCI	ATCGAT	1 cut(s)	299
BseDI	CCNNGG	5 cut(s)	102, 222, 264, 346, 616
BseGI	GGATG	5 cut(s)	149, 330, 424, 523, 612
BseJI	GATNNNNATC	2 cut(s)	46, 245
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	399, 538
BseRI	GAGGAG	3 cut(s)	242, 281, 425
BseSI	GKGCMC	1 cut(s)	625
BseXI	GCAGC	3 cut(s)	22, 316, 570
Bsh1285I	CGRYCG	1 cut(s)	120
BshFI	GGCC	3 cut(s)	14, 139, 425
BshVI	ATCGAT	1 cut(s)	299
BsiEI	CGRYCG	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	625
BsiSI	CCGG	2 cut(s)	102, 598
BsnI	GGCC	3 cut(s)	14, 139, 425
Bsp1286I	GDGCHC	5 cut(s)	109, 162, 234, 273, 625
Bsp143I	GATC	7 cut(s)	240, 274, 296, 404, 503, 520, 626
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	1 cut(s)	575
BspANI	GGCC	3 cut(s)	14, 139, 425
BspCNI	CTCAG	2 cut(s)	400, 537
BspDI	ATCGAT	1 cut(s)	299
BspLI	GGNNCC	4 cut(s)	231, 270, 336, 444
BspPI	GGATC	3 cut(s)	304, 412, 511
BsrDI	GCAATG	1 cut(s)	63
BssECI	CCNNGG	5 cut(s)	102, 222, 264, 346, 616
BssMI	GATC	7 cut(s)	240, 274, 296, 404, 503, 520, 626
Bst2UI	CCWGG	3 cut(s)	224, 347, 389
Bst4CI	ACNGT	2 cut(s)	121, 620
BstDEI	CTNAG	4 cut(s)	188, 308, 408, 524
BstDSI	CCRYGG	1 cut(s)	616
BstF5I	GGATG	5 cut(s)	149, 330, 424, 523, 612
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	7 cut(s)	243, 277, 299, 407, 506, 523, 629
BstMBI	GATC	7 cut(s)	240, 274, 296, 404, 503, 520, 626
BstMCI	CGRYCG	1 cut(s)	120
BstMWI	GCNNNNNNNGC	4 cut(s)	136, 166, 574, 583
BstNI	CCWGG	3 cut(s)	224, 347, 389
BstSCI	CCNGG	4 cut(s)	101, 222, 345, 387
BstSLI	GKGCMC	1 cut(s)	625
BstV1I	GCAGC	3 cut(s)	22, 316, 570
BstX2I	RGATCY	2 cut(s)	404, 503
BstYI	RGATCY	2 cut(s)	404, 503
Bsu15I	ATCGAT	1 cut(s)	299
BsuRI	GGCC	3 cut(s)	14, 139, 425
BsuTUI	ATCGAT	1 cut(s)	299
BtgI	CCRYGG	1 cut(s)	616
BtsCI	GGATG	5 cut(s)	149, 330, 424, 523, 612
CfoI	GCGC	1 cut(s)	361
ClaI	ATCGAT	1 cut(s)	299
Csp6I	GTAC	2 cut(s)	392, 607
CviQI	GTAC	2 cut(s)	392, 607
DdeI	CTNAG	4 cut(s)	188, 308, 408, 524
DpnI	GATC	7 cut(s)	242, 276, 298, 406, 505, 522, 628
DpnII	GATC	7 cut(s)	240, 274, 296, 404, 503, 520, 626
EaeI	YGGCCR	1 cut(s)	137
Eco24I	GRGCYC	4 cut(s)	109, 162, 234, 273
EcoRII	CCWGG	3 cut(s)	222, 345, 387
EcoT38I	GRGCYC	4 cut(s)	109, 162, 234, 273
FaiI	YATR	2 cut(s)	26, 332
FauI	CCCGC	1 cut(s)	582
Fnu4HI	GCNGC	3 cut(s)	36, 305, 584
FokI	GGATG	5 cut(s)	136, 337, 431, 530, 599
FriOI	GRGCYC	4 cut(s)	109, 162, 234, 273
Fsp4HI	GCNGC	3 cut(s)	36, 305, 584
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	3 cut(s)	36, 305, 584
HaeIII	GGCC	3 cut(s)	14, 139, 425
HapII	CCGG	2 cut(s)	102, 598
HhaI	GCGC	1 cut(s)	361
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	3 cut(s)	184, 484, 542
HpaII	CCGG	2 cut(s)	102, 598
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	1 cut(s)	623
Hpy188I	TCNGA	8 cut(s)	154, 240, 265, 409, 447, 483, 508, 631
Hpy188III	TCNNGA	4 cut(s)	178, 215, 338, 559
Hpy8I	GTNNAC	1 cut(s)	623
HpyAV	CCTTC	3 cut(s)	287, 362, 494
HpyCH4III	ACNGT	2 cut(s)	121, 620
HpyCH4V	TGCA	4 cut(s)	38, 304, 568, 623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	136, 166, 574, 583
HpyF3I	CTNAG	4 cut(s)	188, 308, 408, 524
HspAI	GCGC	1 cut(s)	359
Kzo9I	GATC	7 cut(s)	240, 274, 296, 404, 503, 520, 626
LmnI	GCTCC	2 cut(s)	229, 268
Lsp1109I	GCAGC	3 cut(s)	22, 316, 570
LweI	GCATC	2 cut(s)	158, 291
MalI	GATC	7 cut(s)	242, 276, 298, 406, 505, 522, 628
MboI	GATC	7 cut(s)	240, 274, 296, 404, 503, 520, 626
MboII	GAAGA	2 cut(s)	193, 505
MflI	RGATCY	2 cut(s)	404, 503
MhlI	GDGCHC	5 cut(s)	109, 162, 234, 273, 625
MluCI	AATT	2 cut(s)	18, 53
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	2 cut(s)	382, 570
MroXI	GAANNNNTTC	2 cut(s)	168, 477
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	649
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	2 cut(s)	102, 598
MspR9I	CCNGG	4 cut(s)	103, 224, 347, 389
MvaI	CCWGG	3 cut(s)	224, 347, 389
MwoI	GCNNNNNNNGC	4 cut(s)	136, 166, 574, 583
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	7 cut(s)	240, 274, 296, 404, 503, 520, 626
NlaIV	GGNNCC	4 cut(s)	231, 270, 336, 444
OliI	CACNNNNGTG	1 cut(s)	649
PdmI	GAANNNNTTC	2 cut(s)	168, 477
PfeI	GAWTC	2 cut(s)	184, 484
PkrI	GCNGC	3 cut(s)	37, 306, 585
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
Psp6I	CCWGG	3 cut(s)	222, 345, 387
PspGI	CCWGG	3 cut(s)	222, 345, 387
PspN4I	GGNNCC	4 cut(s)	231, 270, 336, 444
PsuI	RGATCY	2 cut(s)	404, 503
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	2 cut(s)	393, 608
RsaNI	GTAC	2 cut(s)	392, 607
RseI	CAYNNNNRTG	1 cut(s)	649
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	3 cut(s)	36, 305, 584
Sau3AI	GATC	7 cut(s)	240, 274, 296, 404, 503, 520, 626
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	4 cut(s)	103, 224, 347, 389
SduI	GDGCHC	5 cut(s)	109, 162, 234, 273, 625
SfaNI	GCATC	2 cut(s)	158, 291
SmiMI	CAYNNNNRTG	1 cut(s)	649
Sse9I	AATT	2 cut(s)	18, 53
SsiI	CCGC	1 cut(s)	575
StyD4I	CCNGG	4 cut(s)	101, 222, 345, 387
TaaI	ACNGT	2 cut(s)	121, 620
TaqI	TCGA	6 cut(s)	116, 179, 200, 299, 318, 551
TasI	AATT	2 cut(s)	18, 53
TfiI	GAWTC	2 cut(s)	184, 484
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TseI	GCWGC	3 cut(s)	35, 304, 583
TspDTI	ATGAA	2 cut(s)	36, 222
VneI	GTGCAC	1 cut(s)	621
XapI	RAATTY	2 cut(s)	18, 53
XmnI	GAANNNNTTC	2 cut(s)	168, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.