Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018592

Physical Location & Seq

Genomic Coordinates Forward (+)

46197764 .. 46198045

Gene Structure 282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39019

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGGCGAAAGATTAAGCAGTGTGGGCGGAAACGGCGTCGTCCACTGTTTTGTCGCCTCCTCTCATCGGCTCTGTGCCGCCATGGGCCTCCCCGTCGGCAAACACATCGTCCTCGACAAACCCCTCCCCATCAACGACGAGCTCGTCTGGGACAACGGCACGTCGTTTCCCCAACCCTGTATCAATCGCATCACCTACACCGACGGAAAATGCAGAGGCGAGGAGGTTGGAAATGTCGTCGTCGAAGTCGGAGGAGATAAGGCGGTCAACGATGAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

93

Amino Acids

9.89

Weight (kDa)

5.0

Isoelectric Point (pI)

20.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018592)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0420451 RchiOBHm_Chr5g0051271 RchiOBHm_Chr6g0244011
rosa_multiflora	Rmu_sc0003613.1_g000006
rosa_rugosa	Rorug03G0272500
rosa_samantha	Rh3DG361000 Rh5BG045400 Rh5BG349500 Rh5CG141900 Rh5DG362300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AciI	CCGC	3 cut(s)	27, 78, 263
AcyI	GRCGYC	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	66
AjiI	CACGTC	1 cut(s)	162
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw21I	GWGCWC	1 cut(s)	144
AoxI	GGCC	1 cut(s)	85
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	144
BccI	CCATC	1 cut(s)	137
BceAI	ACGGC	2 cut(s)	49, 172
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BfaI	CTAG	1 cut(s)	280
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
BmgBI	CACGTC	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	85
BmsI	GCATC	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseRI	GAGGAG	3 cut(s)	49, 236, 267
BshFI	GGCC	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	3 cut(s)	27, 78, 263
BspANI	GGCC	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	81
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 33
BsuRI	GGCC	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	81
BtrI	CACGTC	1 cut(s)	162
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 43
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	25
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	3 cut(s)	70, 87, 142
CviKI_1	RGCY	3 cut(s)	70, 87, 142
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
EciI	GGCGGA	1 cut(s)	42
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	1 cut(s)	85
FaiI	YATR	1 cut(s)	83
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	1 cut(s)	81
Fnu4HI	GCNGC	1 cut(s)	78
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	1 cut(s)	280
GluI	GCNGC	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	87
HgaI	GACGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	1 cut(s)	85
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	2 cut(s)	43, 268
Hpy188I	TCNGA	1 cut(s)	251
Hpy8I	GTNNAC	2 cut(s)	43, 268
Hpy99I	CGWCG	7 cut(s)	41, 98, 140, 166, 206, 242, 245
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 33
HpySE526I	ACGT	1 cut(s)	161
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	85
LpnPI	CCDG	2 cut(s)	133, 190
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	1 cut(s)	280
MaeII	ACGT	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	144
MmeI	TCCRAC	2 cut(s)	208, 229
MseI	TTAA	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	24, 33
NcoI	CCATGG	1 cut(s)	81
NlaIII	CATG	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	79
Psp124BI	GAGCTC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	85
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	1 cut(s)	78
Sau96I	GGNCC	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	4 cut(s)	144, 164, 197, 228
SfaNI	GCATC	1 cut(s)	198
SgeI	CNNG	9 cut(s)	94, 104, 125, 151, 155, 160, 172, 189, 232
SsiI	CCGC	3 cut(s)	27, 78, 263
SspMI	CTAG	1 cut(s)	280
SstI	GAGCTC	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	47
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	2 cut(s)	114, 243
TauI	GCSGC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	2 cut(s)	25, 50
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	2 cut(s)	25, 50
XspI	CTAG	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.