Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018592

Physical Location & Seq

Genomic Coordinates Forward (+)

41385 .. 41621

Gene Structure 237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21869

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGGCGAAAGACTAAGCAGTGTGGCGTCCAAAATCATAGGCGGAAATGGCATCCTCCACCGTTCTGTCGCCTCCTCTCATCGGCTCTGCGCCGGCATGGACCTCCCCATCGGCAAACACATCGTCCTTGACAAACCCCTTCCCATCAACAACGAGCTTGTCTGGGACAACGGTACGTCGTTTCCCCAACCCTGTATCGATCACATCACCGACACCAATGGAAAGTGCAGAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

78

Amino Acids

8.36

Weight (kDa)

7.79

Isoelectric Point (pI)

25.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018592)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0420451 RchiOBHm_Chr5g0051271 RchiOBHm_Chr6g0244011
rosa_multiflora	Rmu_sc0003613.1_g000006
rosa_rugosa	Rorug03G0272500
rosa_samantha	Rh3DG361000 Rh5BG045400 Rh5BG349500 Rh5CG141900 Rh5DG362300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	1 cut(s)	81
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	100
BccI	CCATC	2 cut(s)	116, 152
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BfaI	CTAG	1 cut(s)	235
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmsI	GCATC	1 cut(s)	60
Bsa29I	ATCGAT	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse118I	RCCGGY	1 cut(s)	92
BseCI	ATCGAT	1 cut(s)	198
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	64
BshVI	ATCGAT	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	179
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	1 cut(s)	42
BspDI	ATCGAT	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssMI	GATC	1 cut(s)	199
BssNI	GRCGYC	1 cut(s)	26
Bst4CI	ACNGT	2 cut(s)	62, 173
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	198
BsuTUI	ATCGAT	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	51
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	94
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	100
ClaI	ATCGAT	1 cut(s)	198
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	3 cut(s)	85, 157, 234
CviKI_1	RGCY	3 cut(s)	85, 157, 234
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	100
FaeI	CATG	1 cut(s)	100
FaiI	YATR	2 cut(s)	38, 98
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	1 cut(s)	96
FokI	GGATG	1 cut(s)	38
FspBI	CTAG	1 cut(s)	235
GlaI	GCGC	1 cut(s)	91
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	2 cut(s)	62, 173
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	176
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	1 cut(s)	90
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	3 cut(s)	106, 148, 205
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	1 cut(s)	235
MaeII	ACGT	1 cut(s)	176
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MnlI	CCTC	5 cut(s)	65, 82, 85, 113, 224
MroNI	GCCGGC	1 cut(s)	92
MspI	CCGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	48
NaeI	GCCGGC	1 cut(s)	94
NdeII	GATC	1 cut(s)	199
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	100
PdiI	GCCGGC	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	100
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	100
SetI	ASST	3 cut(s)	105, 159, 179
SfaNI	GCATC	1 cut(s)	60
SgeI	CNNG	7 cut(s)	105, 109, 140, 166, 170, 175, 204
SinI	GGWCC	1 cut(s)	100
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	62, 173
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	1 cut(s)	198
TscAI	CASTG	1 cut(s)	25
TspRI	CASTG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	100
XspI	CTAG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.