Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0018592

Physical Location & Seq

Genomic Coordinates Forward (+)

3614063 .. 3615348

Gene Structure 1286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG045400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGATATCGGAGAACCCGAGTCTGGGATTTCAATTGAATAATAGTAGTGGCAGAGCGTGGGCTCATGACCCCGTTCCGGCAGAGCTAATCCTTACCCCCAAAATCATGGGCGGAAACGGCGTCGTCCACCGTTCTGTCGCCTCCTCTCATCGGCTCTGCGTCGGCAAACACATCGTCCTCGACAAACCCATCCCCATCAACGACGAGCTCGTCTGGGACAACGGCACGTCGTTTCCCCAACCCCGTATCGATCGCATCACCGACACCGACGGAAAGTGCAGAGGCGAGGAGGTTGGAAACGTTGTCGTCGGAGTCGAAGGAGATGAGGCGGTCGACGATGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

12.41

Weight (kDa)

4.71

Isoelectric Point (pI)

21.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018592)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0420451 RchiOBHm_Chr5g0051271 RchiOBHm_Chr6g0244011
rosa_multiflora	Rmu_sc0003613.1_g000006
rosa_rugosa	Rorug03G0272500
rosa_samantha	Rh3DG361000 Rh5BG045400 Rh5BG349500 Rh5CG141900 Rh5DG362300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	333
AciI	CCGC	2 cut(s)	111, 329
AclI	AACGTT	1 cut(s)	300
AcyI	GRCGYC	1 cut(s)	120
AfiI	CCNNNNNNNGG	4 cut(s)	22, 23, 76, 150
AgsI	TTSAA	2 cut(s)	32, 37
AjiI	CACGTC	1 cut(s)	228
AluBI	AGCT	2 cut(s)	85, 208
AluI	AGCT	2 cut(s)	85, 208
Alw21I	GWGCWC	1 cut(s)	210
Ama87I	CYCGRG	1 cut(s)	16
ArsI	GACNNNNNNTTYG	2 cut(s)	159, 191
AsuHPI	GGTGA	1 cut(s)	250
AvaI	CYCGRG	1 cut(s)	16
BanII	GRGCYC	2 cut(s)	64, 210
Bbv12I	GWGCWC	1 cut(s)	210
BccI	CCATC	2 cut(s)	197, 203
BceAI	ACGGC	2 cut(s)	133, 238
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BfaI	CTAG	1 cut(s)	346
BmeT110I	CYCGRG	1 cut(s)	16
BmgBI	CACGTC	1 cut(s)	228
BmsI	GCATC	1 cut(s)	264
Bsa29I	ATCGAT	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 23, 76, 150
BseCI	ATCGAT	1 cut(s)	249
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	4 cut(s)	22, 23, 76, 150
BseRI	GAGGAG	2 cut(s)	133, 302
BsgI	GTGCAG	1 cut(s)	298
Bsh1285I	CGRYCG	2 cut(s)	253, 333
BshVI	ATCGAT	1 cut(s)	249
BsiEI	CGRYCG	2 cut(s)	253, 333
BsiHKAI	GWGCWC	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	4 cut(s)	22, 23, 76, 150
BsmFI	GGGAC	1 cut(s)	230
BsoBI	CYCGRG	1 cut(s)	16
Bsp1286I	GDGCHC	2 cut(s)	64, 210
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	2 cut(s)	111, 329
BspDI	ATCGAT	1 cut(s)	249
BspHI	TCATGA	1 cut(s)	64
BssMI	GATC	1 cut(s)	250
BssNI	GRCGYC	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	189
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstMCI	CGRYCG	2 cut(s)	253, 333
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	106
Bsu15I	ATCGAT	1 cut(s)	249
BsuTUI	ATCGAT	1 cut(s)	249
BtrI	CACGTC	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	189
CciI	TCATGA	1 cut(s)	64
ClaI	ATCGAT	1 cut(s)	249
CseI	GACGC	2 cut(s)	109, 148
CviAII	CATG	2 cut(s)	65, 106
CviJI	RGCY	4 cut(s)	62, 85, 154, 208
CviKI_1	RGCY	4 cut(s)	62, 85, 154, 208
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
EciI	GGCGGA	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	2 cut(s)	64, 210
Eco32I	GATATC	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	208
EcoRV	GATATC	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	64, 210
FaeI	CATG	2 cut(s)	68, 109
FaiI	YATR	2 cut(s)	66, 107
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	2 cut(s)	64, 105
FblI	GTMKAC	1 cut(s)	333
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	2 cut(s)	64, 210
FspBI	CTAG	1 cut(s)	346
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	2 cut(s)	109, 148
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	68, 109
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	2 cut(s)	19, 312
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	2 cut(s)	127, 334
Hpy188I	TCNGA	2 cut(s)	10, 311
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	2 cut(s)	127, 334
Hpy99I	CGWCG	7 cut(s)	125, 164, 206, 232, 272, 311, 338
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	2 cut(s)	227, 300
HpyCH4V	TGCA	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpySE526I	ACGT	2 cut(s)	227, 300
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	68, 109
Kzo9I	GATC	1 cut(s)	250
LpnPI	CCDG	3 cut(s)	8, 90, 199
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	1 cut(s)	346
MaeII	ACGT	2 cut(s)	227, 300
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MfeI	CAATTG	1 cut(s)	32
MhlI	GDGCHC	2 cut(s)	64, 210
MluCI	AATT	1 cut(s)	32
MlyI	GAGTC	2 cut(s)	28, 321
MmeI	TCCRAC	2 cut(s)	274, 289
MnlI	CCTC	7 cut(s)	151, 154, 188, 275, 280, 283, 319
MspI	CCGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	117
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	2 cut(s)	68, 109
PagI	TCATGA	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	3 cut(s)	14, 207, 312
Ple19I	CGATCG	1 cut(s)	253
PleI	GAGTC	2 cut(s)	27, 320
PpsI	GAGTC	2 cut(s)	27, 320
Psp124BI	GAGCTC	1 cut(s)	210
Psp1406I	AACGTT	1 cut(s)	300
PvuI	CGATCG	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	210
SalI	GTCGAC	1 cut(s)	332
Sau3AI	GATC	1 cut(s)	250
SchI	GAGTC	2 cut(s)	28, 321
SduI	GDGCHC	2 cut(s)	64, 210
SetI	ASST	5 cut(s)	87, 210, 230, 294, 303
SfaNI	GCATC	1 cut(s)	264
Sse9I	AATT	1 cut(s)	32
SsiI	CCGC	2 cut(s)	111, 329
SspMI	CTAG	1 cut(s)	346
SstI	GAGCTC	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	2 cut(s)	230, 303
TaqI	TCGA	4 cut(s)	180, 249, 315, 333
TasI	AATT	1 cut(s)	32
TspGWI	ACGGA	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.