Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0018592

Physical Location & Seq

Genomic Coordinates Reverse (-)

44633103 .. 44633390

Gene Structure 288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG361000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCCTCCAAAATCATAGGCGGAAATTGTGTCGTCCATCGTTCCATCGCCTCCTCTTATCGGCTCTGTGCAAACATGGGCCTCCCTGTCGACAAACACATCGTCCCAGACAGACCCCTCCCCGTCAACGACGAGCTCGTTTGGGACAACTGCACGCCATTTGCCCAACCCTGTATCGATCGCATCGTCGACACCGTTGAAATGTACGGAGTCGAGGAGTTGGAAATTTCGTCGTCGAAGTCGGAGGAGATGAGGCAGTTGATGGTGAGGGCTAGGGAGTCGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

10.65

Weight (kDa)

5.04

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018592)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0420451 RchiOBHm_Chr5g0051271 RchiOBHm_Chr6g0244011
rosa_multiflora	Rmu_sc0003613.1_g000006
rosa_rugosa	Rorug03G0272500
rosa_samantha	Rh3DG361000 Rh5BG045400 Rh5BG349500 Rh5CG141900 Rh5DG362300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	90, 189
AciI	CCGC	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	225
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	200
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw21I	GWGCWC	1 cut(s)	138
AoxI	GGCC	2 cut(s)	3, 79
ApoI	RAATTY	1 cut(s)	225
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	138
BccI	CCATC	3 cut(s)	45, 53, 256
BfaI	CTAG	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	79
BmsI	GCATC	1 cut(s)	192
Bsa29I	ATCGAT	1 cut(s)	177
BsaXI	ACNNNNNCTCC	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
BseCI	ATCGAT	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseRI	GAGGAG	3 cut(s)	43, 230, 260
BsgI	GTGCAG	1 cut(s)	136
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	2 cut(s)	5, 81
BshVI	ATCGAT	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	138
BslFI	GGGAC	2 cut(s)	89, 158
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmFI	GGGAC	2 cut(s)	89, 158
BsnI	GGCC	2 cut(s)	5, 81
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	2 cut(s)	5, 81
BspDI	ATCGAT	1 cut(s)	177
BssMI	GATC	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	155
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMCI	CGRYCG	1 cut(s)	181
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	5, 81
BsuTUI	ATCGAT	1 cut(s)	177
BtgZI	GCGATG	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	79
ClaI	ATCGAT	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	5 cut(s)	5, 64, 81, 136, 272
CviKI_1	RGCY	5 cut(s)	5, 64, 81, 136, 272
CviQI	GTAC	1 cut(s)	205
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
EciI	GGCGGA	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	138
FaeI	CATG	1 cut(s)	79
FaiI	YATR	2 cut(s)	17, 77
FaqI	GGGAC	2 cut(s)	89, 158
FatI	CATG	1 cut(s)	75
FblI	GTMKAC	2 cut(s)	90, 189
FriOI	GRGCYC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	5, 81
Hin1II	CATG	1 cut(s)	79
HincII	GTYRAC	3 cut(s)	91, 127, 190
HindII	GTYRAC	3 cut(s)	91, 127, 190
HinfI	GANTC	2 cut(s)	210, 278
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	3 cut(s)	91, 127, 190
Hpy188I	TCNGA	1 cut(s)	244
Hpy8I	GTNNAC	3 cut(s)	91, 127, 190
Hpy99I	CGWCG	4 cut(s)	134, 191, 235, 238
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	2 cut(s)	71, 153
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	178
LpnPI	CCDG	3 cut(s)	99, 120, 184
LweI	GCATC	1 cut(s)	192
MaeI	CTAG	1 cut(s)	273
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	2 cut(s)	25, 225
MlyI	GAGTC	2 cut(s)	219, 287
MmeI	TCCRAC	2 cut(s)	201, 222
MnlI	CCTC	9 cut(s)	16, 61, 64, 92, 128, 208, 238, 246, 261
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	3 cut(s)	135, 183, 192
Ple19I	CGATCG	1 cut(s)	181
PleI	GAGTC	2 cut(s)	218, 286
PpsI	GAGTC	2 cut(s)	218, 286
Psp124BI	GAGCTC	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	79
PvuI	CGATCG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SacI	GAGCTC	1 cut(s)	138
SalI	GTCGAC	2 cut(s)	89, 188
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	2 cut(s)	219, 287
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	1 cut(s)	138
SfaNI	GCATC	1 cut(s)	192
SgeI	CNNG	9 cut(s)	88, 98, 119, 134, 145, 149, 166, 183, 226
Sse9I	AATT	2 cut(s)	25, 225
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	1 cut(s)	273
SstI	GAGCTC	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	5 cut(s)	90, 177, 189, 213, 236
TasI	AATT	2 cut(s)	25, 225
TspGWI	ACGGA	1 cut(s)	222
XapI	RAATTY	1 cut(s)	225
XmiI	GTMKAC	2 cut(s)	90, 189
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.