Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0018592

Physical Location & Seq

Genomic Coordinates Forward (+)

54277723 .. 54278763

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG362300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGACCTCCCCGTCGGCAAACACATTGTCCTCGACAAACCCCTCCCCATCAACTATGAGCTCGTCTGGGACAACAACACATCGTTTCCCCCACCCTGTATCGATCGCATCACCGACACTGACGAAAAGTGCAGAGGCGAGGAGGTTGGAAACGTTGTCGTCAGAGTCGGAGGAGATAAGGCGGCCCTTGTATTCCAGATGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

68

Amino Acids

7.6

Weight (kDa)

4.65

Isoelectric Point (pI)

19.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0018592)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0420451 RchiOBHm_Chr5g0051271 RchiOBHm_Chr6g0244011
rosa_multiflora	Rmu_sc0003613.1_g000006
rosa_rugosa	Rorug03G0272500
rosa_samantha	Rh3DG361000 Rh5BG045400 Rh5BG349500 Rh5CG141900 Rh5DG362300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	11
AciI	CCGC	1 cut(s)	182
AclI	AACGTT	1 cut(s)	153
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw21I	GWGCWC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	183
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
AspS9I	GGNCC	2 cut(s)	4, 184
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BccI	CCATC	1 cut(s)	56
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 184
BmsI	GCATC	1 cut(s)	117
Bsa29I	ATCGAT	1 cut(s)	102
BseCI	ATCGAT	1 cut(s)	102
BseRI	GAGGAG	2 cut(s)	155, 186
BsgI	GTGCAG	1 cut(s)	151
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	185
BshVI	ATCGAT	1 cut(s)	102
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	185
BspDI	ATCGAT	1 cut(s)	102
BssMI	GATC	1 cut(s)	103
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMCI	CGRYCG	1 cut(s)	106
Bsu15I	ATCGAT	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	185
BsuTUI	ATCGAT	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	4, 184
ClaI	ATCGAT	1 cut(s)	102
CviJI	RGCY	2 cut(s)	61, 185
CviKI_1	RGCY	2 cut(s)	61, 185
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	63
FaiI	YATR	1 cut(s)	57
FaqI	GGGAC	1 cut(s)	83
Fnu4HI	GCNGC	1 cut(s)	183
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	185
HinfI	GANTC	1 cut(s)	165
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	164, 170
Hpy188III	TCNNGA	1 cut(s)	196
Hpy99I	CGWCG	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	1 cut(s)	132
HpySE526I	ACGT	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	2 cut(s)	52, 109
LweI	GCATC	1 cut(s)	117
MaeII	ACGT	1 cut(s)	153
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	2 cut(s)	127, 148
MnlI	CCTC	7 cut(s)	17, 41, 53, 128, 133, 136, 164
NdeII	GATC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	184
Ple19I	CGATCG	1 cut(s)	106
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	63
Psp1406I	AACGTT	1 cut(s)	153
PspPI	GGNCC	2 cut(s)	4, 184
PvuI	CGATCG	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	63
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	2 cut(s)	4, 184
SchI	GAGTC	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	4 cut(s)	9, 63, 147, 156
SfaNI	GCATC	1 cut(s)	117
SgeI	CNNG	7 cut(s)	23, 44, 74, 79, 108, 151, 200
SinI	GGWCC	1 cut(s)	4
SsiI	CCGC	1 cut(s)	182
SstI	GAGCTC	1 cut(s)	63
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	2 cut(s)	33, 102
TauI	GCSGC	1 cut(s)	185
TscAI	CASTG	1 cut(s)	124
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.