Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0018592

Physical Location & Seq

Genomic Coordinates Forward (+)

12543656 .. 12543949

Gene Structure 294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG141900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCCACCCTGCATCCAAGCGTGCCCCGGAAATCATGGGCAAAAACATCGTCGTCCACCTTTCTGTCGCCTCCTCTCATCGGCTCTGCGTTGGCATGGGCCTCCCGTCGGCAAACACATCGTCCTCGACAAACCCCTCCCCATCAACGACGAGCTCTTCTGGGACAACGGCACATCGTTTCTCCAACCCTGTATCGATCGCATCACCGACACCTACGAAAAGTGCAGAGGCAAGGAGGTTGGAAACGTCGTCGTCGGAGTCGGAGGAGATGAGGCGGTTGACGATGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.76

Weight (kDa)

5.73

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018592)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0420451 RchiOBHm_Chr5g0051271 RchiOBHm_Chr6g0244011
rosa_multiflora	Rmu_sc0003613.1_g000006
rosa_rugosa	Rorug03G0272500
rosa_samantha	Rh3DG361000 Rh5BG045400 Rh5BG349500 Rh5CG141900 Rh5DG362300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	275
AfiI	CCNNNNNNNGG	2 cut(s)	79, 107
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw21I	GWGCWC	1 cut(s)	156
AoxI	GGCC	1 cut(s)	98
ArsI	GACNNNNNNTTYG	4 cut(s)	34, 66, 105, 137
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	156
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	184
BcgI	CGANNNNNNTGC	4 cut(s)	29, 63, 100, 134
BcnI	CCSGG	1 cut(s)	27
BfaI	CTAG	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	2 cut(s)	21, 210
BpuMI	CCSGG	1 cut(s)	27
Bsa29I	ATCGAT	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 107
BseCI	ATCGAT	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	79, 107
BseRI	GAGGAG	2 cut(s)	62, 279
BseSI	GKGCMC	1 cut(s)	26
BsgI	GTGCAG	1 cut(s)	244
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	100
BshVI	ATCGAT	1 cut(s)	195
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	79, 107
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	100
Bsp1286I	GDGCHC	2 cut(s)	26, 156
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	1 cut(s)	100
BspDI	ATCGAT	1 cut(s)	195
BspQI	GCTCTTC	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	12
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMCI	CGRYCG	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	25
BstSLI	GKGCMC	1 cut(s)	26
Bsu15I	ATCGAT	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	100
BsuTUI	ATCGAT	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	98
ClaI	ATCGAT	1 cut(s)	195
CviAII	CATG	2 cut(s)	35, 95
CviJI	RGCY	3 cut(s)	83, 100, 154
CviKI_1	RGCY	3 cut(s)	83, 100, 154
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	154
EcoICRI	GAGCTC	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	156
FaeI	CATG	2 cut(s)	38, 98
FaiI	YATR	2 cut(s)	36, 96
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	2 cut(s)	34, 94
FriOI	GRGCYC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	1 cut(s)	27
Hin1II	CATG	2 cut(s)	38, 98
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	1 cut(s)	258
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	2 cut(s)	56, 280
Hpy188I	TCNGA	2 cut(s)	257, 263
Hpy8I	GTNNAC	2 cut(s)	56, 280
Hpy99I	CGWCG	6 cut(s)	54, 110, 152, 251, 254, 257
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	2 cut(s)	12, 225
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	38, 98
Kzo9I	GATC	1 cut(s)	196
LguI	GCTCTTC	1 cut(s)	161
LpnPI	CCDG	4 cut(s)	22, 40, 145, 202
LweI	GCATC	2 cut(s)	21, 210
MaeI	CTAG	1 cut(s)	292
MaeII	ACGT	1 cut(s)	246
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	1 cut(s)	148
MhlI	GDGCHC	2 cut(s)	26, 156
MlyI	GAGTC	1 cut(s)	267
MmeI	TCCRAC	4 cut(s)	208, 220, 235, 241
MnlI	CCTC	9 cut(s)	80, 83, 111, 134, 146, 221, 229, 257, 265
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	27
NciI	CCSGG	1 cut(s)	27
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	2 cut(s)	38, 98
PciSI	GCTCTTC	1 cut(s)	161
Ple19I	CGATCG	1 cut(s)	199
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	98
PvuI	CGATCG	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	161
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	2 cut(s)	26, 156
SetI	ASST	5 cut(s)	61, 156, 215, 240, 249
SfaNI	GCATC	2 cut(s)	21, 210
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	1 cut(s)	292
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	25
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	2 cut(s)	126, 195
XspI	CTAG	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.