Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003613.1

Orthogroup ID

OG0018592

Physical Location & Seq

Genomic Coordinates Forward (+)

32403 .. 32765

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003613.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgaggagacgatgctctgaacactgccacccactccaccctgcatcccagcgtgccccaaaaatcataggcggaagactgagcagcgtggcctccaaaatcataggcggaaattgcgtcgtctacctttccatcgcctcctctcattggctctgcgcaaacatgggcctccctgtcggcaaacacatcgtcccagacagacccctccccgtcaacgacgagctcatttgggataactgcacgccgtttgcccaaccctgtatcgatcgcatcgtcgacaccttcgaaatgtacggagtcgaggaggttggaaatgtcgtcgttggagtaggaggagatgagacagttgatggtgagggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

12.96

Weight (kDa)

5.64

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018592)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0420451 RchiOBHm_Chr5g0051271 RchiOBHm_Chr6g0244011
rosa_multiflora	Rmu_sc0003613.1_g000006
rosa_rugosa	Rorug03G0272500
rosa_samantha	Rh3DG361000 Rh5BG045400 Rh5BG349500 Rh5CG141900 Rh5DG362300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	157
AccI	GTMKAC	2 cut(s)	123, 276
AciI	CCGC	2 cut(s)	72, 108
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	147
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	335
AoxI	GGCC	2 cut(s)	90, 166
ApeKI	GCWGC	1 cut(s)	84
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	166
AsuII	TTCGAA	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	2 cut(s)	140, 344
BceAI	ACGGC	1 cut(s)	229
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	361
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	166
BmsI	GCATC	3 cut(s)	2, 53, 279
BpiI	GAAGAC	1 cut(s)	82
Bpu14I	TTCGAA	1 cut(s)	285
Bsa29I	ATCGAT	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
BseCI	ATCGAT	1 cut(s)	264
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	4 cut(s)	19, 130, 317, 348
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	96
BseYI	CCCAGC	1 cut(s)	48
BsgI	GTGCAG	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	268
BshFI	GGCC	2 cut(s)	92, 168
BshVI	ATCGAT	1 cut(s)	264
BsiEI	CGRYCG	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	92, 168
Bsp119I	TTCGAA	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	58, 225
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	2 cut(s)	72, 108
BspANI	GGCC	2 cut(s)	92, 168
BspCNI	CTCAG	1 cut(s)	72
BspDI	ATCGAT	1 cut(s)	264
BspT104I	TTCGAA	1 cut(s)	285
BssMI	GATC	1 cut(s)	265
Bst4CI	ACNGT	1 cut(s)	346
BstBI	TTCGAA	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	54, 242
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	1 cut(s)	265
BstMCI	CGRYCG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	96
BstV2I	GAAGAC	1 cut(s)	82
Bsu15I	ATCGAT	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	92, 168
BsuTUI	ATCGAT	1 cut(s)	264
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	54, 242
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	166
ClaI	ATCGAT	1 cut(s)	264
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	5 cut(s)	92, 151, 168, 223, 360
CviKI_1	RGCY	5 cut(s)	92, 151, 168, 223, 360
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
EciI	GGCGGA	2 cut(s)	87, 123
Ecl136II	GAGCTC	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	225
FaeI	CATG	1 cut(s)	166
FaiI	YATR	3 cut(s)	68, 104, 164
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	1 cut(s)	162
FblI	GTMKAC	2 cut(s)	123, 276
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	31
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	85
FspBI	CTAG	1 cut(s)	361
FspI	TGCGCA	1 cut(s)	157
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	85
GsaI	CCCAGC	1 cut(s)	52
HaeIII	GGCC	2 cut(s)	92, 168
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	2 cut(s)	214, 277
HindII	GTYRAC	2 cut(s)	214, 277
HinfI	GANTC	1 cut(s)	297
Hpy166II	GTNNAC	3 cut(s)	124, 214, 277
Hpy188I	TCNGA	1 cut(s)	19
Hpy8I	GTNNAC	3 cut(s)	124, 214, 277
Hpy99I	CGWCG	4 cut(s)	122, 221, 278, 323
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	2 cut(s)	44, 240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	265
LpnPI	CCDG	5 cut(s)	54, 62, 186, 207, 271
Lsp1109I	GCAGC	1 cut(s)	96
LweI	GCATC	3 cut(s)	2, 53, 279
MaeI	CTAG	1 cut(s)	361
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	1 cut(s)	87
MhlI	GDGCHC	2 cut(s)	58, 225
MluCI	AATT	1 cut(s)	112
MlyI	GAGTC	1 cut(s)	306
MmeI	TCCRAC	2 cut(s)	289, 304
MnlI	CCTC	9 cut(s)	103, 148, 151, 179, 215, 295, 298, 326, 349
MwoI	GCNNNNNNNGC	1 cut(s)	114
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	166
NsbI	TGCGCA	1 cut(s)	157
NspV	TTCGAA	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 282
PkrI	GCNGC	1 cut(s)	86
Ple19I	CGATCG	1 cut(s)	268
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Psp124BI	GAGCTC	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	166
PvuI	CGATCG	1 cut(s)	268
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SacI	GAGCTC	1 cut(s)	225
SalI	GTCGAC	1 cut(s)	275
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	306
SduI	GDGCHC	2 cut(s)	58, 225
SetI	ASST	4 cut(s)	129, 225, 284, 309
SfaNI	GCATC	3 cut(s)	2, 53, 279
SfuI	TTCGAA	1 cut(s)	285
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	2 cut(s)	72, 108
SspMI	CTAG	1 cut(s)	361
SstI	GAGCTC	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	4 cut(s)	264, 276, 285, 300
TasI	AATT	1 cut(s)	112
TscAI	CASTG	1 cut(s)	29
TseI	GCWGC	1 cut(s)	84
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	29
XmiI	GTMKAC	2 cut(s)	123, 276
XspI	CTAG	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.