Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019013

Physical Location & Seq

Genomic Coordinates Forward (+)

3983430 .. 3987808

Gene Structure 4379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28754

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAAACCGACGAAGAAGAACAACGCGTCACTCCATTCCAGCTCCAGTTCGACAAGCCAGTCGCTTCGCAGGTTAAGATCGCAGAGTGGAATCCCGAGAAGGATTTACTCGCCATGAGGCTCTGGACAATCTCCCCAGGGAAGAGCATAACGTCTTTGTGTTGGAGACCTGATGGTAAAGCCGTCGCCGTCTCATTGCATGATGTTGAATTTTCAAACTTCTTCAATTGGCTCTTGAAGTGTATAAAGTTACTCAATTCAGAACCCAGTGATCACCATCTTCTACTGTACAATAGGTCTGTGCCTAGTATTCATGTGTTTAATCTGGTTATCAGCATCTATTCGCTTACTCACACATGTCAGTTTGGCAGTGAACTTGTTGTTATATTCTTGACGTTTCTATATGACCAAGATCCTGTTAAGCAGTTGCTGGAGGTGTCGGAAGCTGATGAGAGTATCGAAGTTGGATTGGAAACAGTGCAGAGAGTTAGAGAATTAGTTCAGTTTGGGGGAGTTTCAGATTGTGAGCACCTGCAGAGGACGTTAGCCAAGGAATTTCAGCAGATGGAGTCTAGTGTCAATGAAAGTCAGATTGTTTTATTATTAAATGAAACAACTACCACTTCTGAAAGCTCTGGTGATGCCTGTATGATGATTGTGCAAGCAAATGACCTTCCATATGTATCTATCACAAGATCCTCTAGTCTAAACTATTGGAACTTGCATCAACTGAAGGACTCTGTTGTTCACTTGCAAATGAAGAATGAGAAGGTTCGCAGTATACCCCATTCTGTTATTGCTCCTCTAGCAGTTAGCTGTAAGTCGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC4 ANAPC4_WD40

Protein Analysis

276

Amino Acids

31.32

Weight (kDa)

5.1

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019013)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006431
rosa_laevigata	RLG00000031360
rosa_multiflora	Rmu_co8360215.1_g000001 Rmu_sc0008991.1_g000006 Rmu_sc0036442.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069550
rosa_rugosa	Rorug05G0252100
rosa_samantha	Rh5CG363500
rosa_wichuraiana	Rw5G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	540
AasI	GACNNNNNNGTC	1 cut(s)	59
Acc36I	ACCTGC	2 cut(s)	61, 540
AccI	GTMKAC	1 cut(s)	781
AccII	CGCG	1 cut(s)	27
AclWI	GGATC	2 cut(s)	407, 690
AcsI	RAATTY	2 cut(s)	209, 554
AcuI	CTGAAG	1 cut(s)	752
AfaI	GTAC	1 cut(s)	290
AflIII	ACRYGT	2 cut(s)	25, 356
AgsI	TTSAA	4 cut(s)	209, 216, 226, 238
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	4 cut(s)	43, 446, 633, 816
AluI	AGCT	4 cut(s)	43, 446, 633, 816
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	2 cut(s)	160, 196
AlwI	GGATC	2 cut(s)	407, 690
AlwNI	CAGNNNCTG	1 cut(s)	430
Ama87I	CYCGRG	1 cut(s)	95
ApoI	RAATTY	2 cut(s)	209, 554
Asp700I	GAANNNNTTC	1 cut(s)	498
AsuHPI	GGTGA	2 cut(s)	266, 650
AvaI	CYCGRG	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	531
BccI	CCATC	3 cut(s)	167, 285, 559
BceAI	ACGGC	2 cut(s)	167, 173
BciT130I	CCWGG	1 cut(s)	138
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	160, 196
BfaI	CTAG	4 cut(s)	306, 573, 702, 806
BfmI	CTRYAG	1 cut(s)	533
BfuAI	ACCTGC	2 cut(s)	61, 540
Bme1390I	CCNGG	1 cut(s)	138
BmeT110I	CYCGRG	1 cut(s)	95
BmrFI	CCNGG	1 cut(s)	138
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	3 cut(s)	345, 631, 733
BmuI	ACTGGG	1 cut(s)	261
BpmI	CTGGAG	2 cut(s)	29, 452
BsaBI	GATNNNNATC	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	3 cut(s)	136, 137, 549
Bse1I	ACTGG	3 cut(s)	46, 59, 267
Bse3DI	GCAATG	1 cut(s)	194
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	3 cut(s)	136, 137, 549
BseJI	GATNNNNATC	1 cut(s)	276
BseMI	GCAATG	1 cut(s)	194
BseNI	ACTGG	3 cut(s)	46, 59, 267
BseRI	GAGGAG	1 cut(s)	792
BsgI	GTGCAG	1 cut(s)	500
Bsh1236I	CGCG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	531
BsiHKCI	CYCGRG	1 cut(s)	95
BsmAI	GTCTC	2 cut(s)	160, 196
BsmBI	CGTCTC	1 cut(s)	196
Bso31I	GGTCTC	1 cut(s)	160
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp1407I	TGTACA	1 cut(s)	288
Bsp143I	GATC	4 cut(s)	78, 271, 412, 695
BspFNI	CGCG	1 cut(s)	27
BspMAI	CTGCAG	1 cut(s)	537
BspMI	ACCTGC	2 cut(s)	61, 540
BspPI	GGATC	2 cut(s)	407, 690
BspQI	GCTCTTC	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	194
BsrGI	TGTACA	1 cut(s)	288
BsrI	ACTGG	3 cut(s)	46, 59, 267
BssECI	CCNNGG	3 cut(s)	136, 137, 549
BssMI	GATC	4 cut(s)	78, 271, 412, 695
BssNAI	GTATAC	1 cut(s)	782
BssT1I	CCWWGG	1 cut(s)	549
Bst1107I	GTATAC	1 cut(s)	782
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	2 cut(s)	288, 478
Bst6I	CTCTTC	1 cut(s)	137
BstAUI	TGTACA	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	663
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	4 cut(s)	81, 274, 415, 698
BstMAI	GTCTC	2 cut(s)	160, 196
BstMBI	GATC	4 cut(s)	78, 271, 412, 695
BstMWI	GCNNNNNNNGC	1 cut(s)	806
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	533
BstUI	CGCG	1 cut(s)	27
BstX2I	RGATCY	2 cut(s)	412, 695
BstYI	RGATCY	2 cut(s)	412, 695
BstZ17I	GTATAC	1 cut(s)	782
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	3 cut(s)	274, 376, 483
BveI	ACCTGC	2 cut(s)	61, 540
Cac8I	GCNNGC	1 cut(s)	663
CaiI	CAGNNNCTG	1 cut(s)	430
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	4 cut(s)	115, 200, 314, 357
CviJI	RGCY	9 cut(s)	43, 58, 121, 182, 232, 446, 548, 633, 816
CviKI_1	RGCY	9 cut(s)	43, 58, 121, 182, 232, 446, 548, 633, 816
CviQI	GTAC	1 cut(s)	289
DpnI	GATC	4 cut(s)	80, 273, 414, 697
DpnII	GATC	4 cut(s)	78, 271, 412, 695
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	549
Eco31I	GGTCTC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	752
Eco88I	CYCGRG	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	549
Esp3I	CGTCTC	1 cut(s)	196
FaeI	CATG	4 cut(s)	118, 203, 317, 360
FatI	CATG	4 cut(s)	114, 199, 313, 356
FauNDI	CATATG	1 cut(s)	679
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	781
FspBI	CTAG	4 cut(s)	306, 573, 702, 806
GsuI	CTGGAG	2 cut(s)	29, 452
HgaI	GACGC	1 cut(s)	16
Hin1II	CATG	4 cut(s)	118, 203, 317, 360
HinfI	GANTC	3 cut(s)	91, 569, 737
HphI	GGTGA	2 cut(s)	266, 650
Hpy166II	GTNNAC	3 cut(s)	374, 748, 782
Hpy188I	TCNGA	5 cut(s)	262, 442, 520, 591, 628
Hpy188III	TCNNGA	4 cut(s)	95, 124, 235, 391
Hpy8I	GTNNAC	3 cut(s)	374, 748, 782
Hpy99I	CGWCG	2 cut(s)	14, 188
HpyAV	CCTTC	4 cut(s)	94, 683, 727, 763
HpyCH4III	ACNGT	2 cut(s)	288, 478
HpyCH4IV	ACGT	3 cut(s)	152, 395, 542
HpyCH4V	TGCA	6 cut(s)	199, 481, 535, 661, 724, 754
HpyF10VI	GCNNNNNNNGC	1 cut(s)	806
HpySE526I	ACGT	3 cut(s)	152, 395, 542
Hsp92II	CATG	4 cut(s)	118, 203, 317, 360
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	4 cut(s)	78, 271, 412, 695
LguI	GCTCTTC	1 cut(s)	137
LmnI	GCTCC	2 cut(s)	48, 805
LweI	GCATC	3 cut(s)	345, 631, 733
MaeI	CTAG	4 cut(s)	306, 573, 702, 806
MaeII	ACGT	3 cut(s)	152, 395, 542
MaeIII	GTNAC	2 cut(s)	28, 249
MalI	GATC	4 cut(s)	80, 273, 414, 697
MboI	GATC	4 cut(s)	78, 271, 412, 695
MboII	GAAGA	6 cut(s)	26, 29, 154, 214, 272, 772
MfeI	CAATTG	1 cut(s)	226
MflI	RGATCY	2 cut(s)	412, 695
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	5 cut(s)	209, 226, 256, 494, 554
MluI	ACGCGT	1 cut(s)	25
MlyI	GAGTC	2 cut(s)	578, 731
MmeI	TCCRAC	3 cut(s)	143, 420, 445
MnlI	CCTC	5 cut(s)	111, 427, 531, 709, 813
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	4 cut(s)	75, 321, 420, 605
MspR9I	CCNGG	1 cut(s)	138
MunI	CAATTG	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	806
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	4 cut(s)	78, 271, 412, 695
NlaIII	CATG	4 cut(s)	118, 203, 317, 360
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	360
PaqCI	CACCTGC	1 cut(s)	540
PasI	CCCWGGG	1 cut(s)	137
PciI	ACATGT	1 cut(s)	356
PciSI	GCTCTTC	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	91
PleI	GAGTC	2 cut(s)	577, 731
PpsI	GAGTC	2 cut(s)	577, 731
PscI	ACATGT	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	537
PstNI	CAGNNNCTG	1 cut(s)	430
PsuI	RGATCY	2 cut(s)	412, 695
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SapI	GCTCTTC	1 cut(s)	137
SaqAI	TTAA	4 cut(s)	75, 321, 420, 605
Sau3AI	GATC	4 cut(s)	78, 271, 412, 695
SchI	GAGTC	2 cut(s)	578, 731
ScrFI	CCNGG	1 cut(s)	138
SduI	GDGCHC	1 cut(s)	531
SfaNI	GCATC	3 cut(s)	345, 631, 733
SfcI	CTRYAG	1 cut(s)	533
Sse9I	AATT	5 cut(s)	209, 226, 256, 494, 554
SspMI	CTAG	4 cut(s)	306, 573, 702, 806
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	2 cut(s)	288, 478
TaiI	ACGT	3 cut(s)	155, 398, 545
TaqI	TCGA	2 cut(s)	51, 459
TasI	AATT	5 cut(s)	209, 226, 256, 494, 554
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	4 cut(s)	75, 321, 420, 605
Tru9I	TTAA	4 cut(s)	75, 321, 420, 605
TscAI	CASTG	3 cut(s)	274, 376, 483
TseFI	GTSAC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	4 cut(s)	302, 597, 624, 773
TspRI	CASTG	3 cut(s)	274, 376, 483
XapI	RAATTY	2 cut(s)	209, 554
XceI	RCATGY	1 cut(s)	360
XmiI	GTMKAC	1 cut(s)	781
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	4 cut(s)	306, 573, 702, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.