Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036442.1

Orthogroup ID

OG0019013

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1792

Gene Structure 1792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036442.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 443 bp

atgggagaactaagaggcctttcaagatggagagcacgctatcagggcatcggtttggatgagacgcttatcaataatgcaacagaaaaagctggaatgatacttgtacaagttgaacggtttatcagggtgctttcatctgtggtgcagcagttttcgaacttcttcaattggctcttgaagtgtataaagttactcaattcagaacccagtgatcatcatcttctactgtacaatagtgaacttgttgttatattcttgaagttcctatatgaccaagatcctgttaagcagttgctggaggcgtcggaagctgatgagagtatcgaagttggattggaaacagtgcagagagttagagaattagttcagtttgggggattttcagattgtgagcacctgcagaggacgttagccaaggaatttcagcagatggagtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC4 ANAPC4_WD40

Protein Analysis

147

Amino Acids

17.02

Weight (kDa)

5.09

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019013)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006431
rosa_laevigata	RLG00000031360
rosa_multiflora	Rmu_co8360215.1_g000001 Rmu_sc0008991.1_g000006 Rmu_sc0036442.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069550
rosa_rugosa	Rorug05G0252100
rosa_samantha	Rh5CG363500
rosa_wichuraiana	Rw5G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	408
Acc36I	ACCTGC	1 cut(s)	408
AclWI	GGATC	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	422
AcyI	GRCGYC	1 cut(s)	305
AfaI	GTAC	2 cut(s)	108, 233
AgsI	TTSAA	5 cut(s)	24, 116, 169, 181, 262
AluBI	AGCT	2 cut(s)	92, 314
AluI	AGCT	2 cut(s)	92, 314
Alw21I	GWGCWC	2 cut(s)	37, 399
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	275
AlwNI	CAGNNNCTG	1 cut(s)	298
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	422
Asp700I	GAANNNNTTC	2 cut(s)	164, 366
AsuII	TTCGAA	1 cut(s)	158
Bbv12I	GWGCWC	2 cut(s)	37, 399
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	2 cut(s)	21, 427
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	408
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	320
Bpu14I	TTCGAA	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	1 cut(s)	64
BseJI	GATNNNNATC	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	160
BsgI	GTGCAG	2 cut(s)	167, 368
BshFI	GGCC	1 cut(s)	18
BsiHKAI	GWGCWC	2 cut(s)	37, 399
BsmAI	GTCTC	1 cut(s)	56
BsmBI	CGTCTC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	18
Bsp119I	TTCGAA	1 cut(s)	158
Bsp1286I	GDGCHC	2 cut(s)	37, 399
Bsp1407I	TGTACA	2 cut(s)	106, 231
Bsp143I	GATC	2 cut(s)	214, 280
BspANI	GGCC	1 cut(s)	18
BspMAI	CTGCAG	1 cut(s)	405
BspMI	ACCTGC	1 cut(s)	408
BspPI	GGATC	1 cut(s)	275
BspT104I	TTCGAA	1 cut(s)	158
BsrGI	TGTACA	2 cut(s)	106, 231
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	2 cut(s)	214, 280
BssNI	GRCGYC	1 cut(s)	305
BssT1I	CCWWGG	1 cut(s)	417
Bst4CI	ACNGT	3 cut(s)	120, 231, 346
BstACI	GRCGYC	1 cut(s)	305
BstAUI	TGTACA	2 cut(s)	106, 231
BstBI	TTCGAA	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	2 cut(s)	217, 283
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	2 cut(s)	214, 280
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 311
BstSFI	CTRYAG	1 cut(s)	401
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	64
BtsIMutI	CAGTG	2 cut(s)	217, 351
BveI	ACCTGC	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	37
CaiI	CAGNNNCTG	1 cut(s)	298
CseI	GACGC	2 cut(s)	73, 294
Csp6I	GTAC	2 cut(s)	107, 232
CviJI	RGCY	5 cut(s)	18, 92, 175, 314, 416
CviKI_1	RGCY	5 cut(s)	18, 92, 175, 314, 416
CviQI	GTAC	2 cut(s)	107, 232
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	2 cut(s)	216, 282
DpnII	GATC	2 cut(s)	214, 280
Eco130I	CCWWGG	1 cut(s)	417
Eco147I	AGGCCT	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
Esp3I	CGTCTC	1 cut(s)	56
FaiI	YATR	4 cut(s)	188, 254, 271, 273
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	149
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	149
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	1 cut(s)	149
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	18
HgaI	GACGC	2 cut(s)	73, 294
Hin1I	GRCGYC	1 cut(s)	305
HinfI	GANTC	1 cut(s)	437
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	3 cut(s)	205, 310, 388
Hpy188III	TCNNGA	3 cut(s)	24, 178, 259
Hpy8I	GTNNAC	1 cut(s)	242
Hpy99I	CGWCG	1 cut(s)	310
HpyCH4III	ACNGT	3 cut(s)	120, 231, 346
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	4 cut(s)	80, 148, 349, 403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 311
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	410
Hsp92I	GRCGYC	1 cut(s)	305
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	214, 280
LpnPI	CCDG	7 cut(s)	29, 78, 112, 223, 284, 297, 413
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	1 cut(s)	410
MaeIII	GTNAC	1 cut(s)	192
MalI	GATC	2 cut(s)	216, 282
MboI	GATC	2 cut(s)	214, 280
MboII	GAAGA	2 cut(s)	157, 215
MfeI	CAATTG	1 cut(s)	169
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	2 cut(s)	37, 399
MluCI	AATT	4 cut(s)	169, 199, 362, 422
MmeI	TCCRAC	2 cut(s)	288, 313
MnlI	CCTC	3 cut(s)	8, 295, 399
MroXI	GAANNNNTTC	2 cut(s)	164, 366
MseI	TTAA	1 cut(s)	288
MunI	CAATTG	1 cut(s)	169
MwoI	GCNNNNNNNGC	2 cut(s)	45, 311
NdeII	GATC	2 cut(s)	214, 280
NspV	TTCGAA	1 cut(s)	158
PaqCI	CACCTGC	1 cut(s)	408
PceI	AGGCCT	1 cut(s)	18
PdmI	GAANNNNTTC	2 cut(s)	164, 366
PkrI	GCNGC	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	405
PstNI	CAGNNNCTG	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	2 cut(s)	108, 233
RsaNI	GTAC	2 cut(s)	107, 232
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	2 cut(s)	214, 280
SduI	GDGCHC	2 cut(s)	37, 399
SetI	ASST	4 cut(s)	94, 316, 402, 413
SfaNI	GCATC	1 cut(s)	57
SfcI	CTRYAG	1 cut(s)	401
SfuI	TTCGAA	1 cut(s)	158
Sse9I	AATT	4 cut(s)	169, 199, 362, 422
SseBI	AGGCCT	1 cut(s)	18
SspMI	CTAG	1 cut(s)	441
StuI	AGGCCT	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	3 cut(s)	120, 231, 346
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	2 cut(s)	158, 327
TasI	AATT	4 cut(s)	169, 199, 362, 422
TatI	WGTACW	2 cut(s)	106, 231
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	2 cut(s)	217, 351
TseI	GCWGC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	126
TspRI	CASTG	2 cut(s)	217, 351
XapI	RAATTY	1 cut(s)	422
XmnI	GAANNNNTTC	2 cut(s)	164, 366
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.