Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0019013

Physical Location & Seq

Genomic Coordinates Reverse (-)

4385382 .. 4389485

Gene Structure 4104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031360

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGAAACCGACGAAGAAGAACAACGCGTCACTCCATTCCAGCTCCAGTTCGACAAGCCAGTCGCTTCGCAGGTTAAGATCGCAGAGTGGAATCCCGAGAAGGATTTACTCGCCATGGTAACTGAAGACTCCAAGATTTTACTGCACCGCTTCAATTGGCAGAGGCTCTGGACAATCTCCCCAGGGAAGAGCATAACGTCTTTGTGTTGGAGACCTGATGGTAAAGCCGTCGCCGTCGGGCTGGAAGATGGAACAGTCTCATTGCATGATGTTGAATTTTCGAACTTCTTCAATTGGCTCTTGAAGTGTATAAAGTTACTCAATTCAGAACCCAGTGATCACCATCTTCTACTGTACAATAGTGAACTTGTTGTTATATTCTTGAAGTTTCTATATGACCAAGATCCTGTTAAGCAGTTGCTGGAGGTGTCGGAAGCTGATGAGAGTATCGAAGTTGGATTGGAAACAGTGCAGAGAGTTAGAGAATTAGTTCAGTTTGGGGGAGTTTCAGATTGTGAGCACCTGCAGAGGACGTTAGCCAAGGAATTTCAGCAGATGGAGTCTAGTTTTAAGGAGGCTTTTCAGATGCCCTTTACTACAATTTCAAGAAAGATAGCTGTGAAGATTCATTGCCACTTTGCCCACTTCCACCTTTGTCAGCATCTTTGTCTACCAGTATTCCTATATCAGTATCATATTATGAGGATGCCTCCCATTCCGTCCCTCATCAGACTCGTCAACATATGTTTCTTGACTACATATCTTTCCATATACCAGATGAGTCCTTCTCTGGAAAGTCAGATTGTTTTATTATTAAATGAAACAACTACCACTTCTGAAAGCTCTGGTGATGCCTGTATGATGATTGTGCAAGCAAATGACCTTCCATATGTATCTATCACAAGATCCACTAGTCTAAACTATTGGAACTTGCATCAACTGAAGGACTCTGTTGTTCACTTGCAAATGAAGAATGAGAAGGTTCGCAGTATACCCCATTCTGTTATTGCTCCTCTAGCAGTTAGCTTCATGCAGGATTCGAGCTTCACTAATGCCGGAGATGTTGTCTCTTTTATAAAAAACTGTCCAAGGCTGAAGAATTTGTTTATTGAGCTGAATGAGAATACTTGTAAGAGTGCAATTTACCGCGATATGCTGCAGAATCCAGCCATGGATCACAATATGAGCTTCCTTAGTGCCCTCAAATTTGTCAAAATAAGAGGATTTAAGGTTACAAATAAGCAACACGAACATTTAGCAAGGTTTGTCTTAAACAAGTCTAGGTTCTTAGAGCGTATGGTCCTCCGTTGGCCTAGGAACCGATGCCGTTTATGCCGCGGTGTGCCTTATCTACCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC4 ANAPC4_WD40

Protein Analysis

454

Amino Acids

52.49

Weight (kDa)

7.25

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	23 - 92	2.4e-06	THOC3 beta-propeller domain
Beta-prop_WDR35_TULP_N	PF24797	23 - 103	3e-06	WDR35/TULP4 N-terminal
ANAPC4_WD40	PF12894	29 - 94	1.2e-22	Anaphase-promoting complex subunit 4 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019013)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006431
rosa_laevigata	RLG00000031360
rosa_multiflora	Rmu_co8360215.1_g000001 Rmu_sc0008991.1_g000006 Rmu_sc0036442.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069550
rosa_rugosa	Rorug05G0252100
rosa_samantha	Rh5CG363500
rosa_wichuraiana	Rw5G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1076
AarI	CACCTGC	1 cut(s)	531
AasI	GACNNNNNNGTC	1 cut(s)	59
Acc36I	ACCTGC	2 cut(s)	61, 531
AccI	GTMKAC	2 cut(s)	670, 991
AccII	CGCG	3 cut(s)	27, 1149, 1338
AciI	CCGC	4 cut(s)	148, 1147, 1336, 1338
AclWI	GGATC	3 cut(s)	398, 900, 1182
AcsI	RAATTY	4 cut(s)	275, 545, 1099, 1205
AcuI	CTGAAG	3 cut(s)	144, 962, 1115
AfaI	GTAC	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	6 cut(s)	154, 275, 292, 304, 385, 606
AhlI	ACTAGT	1 cut(s)	911
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	8 cut(s)	43, 437, 617, 843, 1026, 1044, 1114, 1188
AluI	AGCT	8 cut(s)	43, 437, 617, 843, 1026, 1044, 1114, 1188
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	3 cut(s)	205, 262, 1072
AlwI	GGATC	3 cut(s)	398, 900, 1182
AlwNI	CAGNNNCTG	1 cut(s)	421
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	1310
ApeKI	GCWGC	1 cut(s)	1156
ApoI	RAATTY	4 cut(s)	275, 545, 1099, 1205
Asp700I	GAANNNNTTC	2 cut(s)	287, 489
AspA2I	CCTAGG	1 cut(s)	1313
AspS9I	GGNCC	1 cut(s)	1300
AsuHPI	GGTGA	2 cut(s)	332, 860
AsuII	TTCGAA	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	1300
AvrII	CCTAGG	1 cut(s)	1313
BaeGI	GKGCMC	1 cut(s)	1201
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	522
BbvI	GCAGC	1 cut(s)	1143
BccI	CCATC	4 cut(s)	212, 242, 351, 550
BceAI	ACGGC	3 cut(s)	212, 218, 1311
BciT130I	CCWGG	1 cut(s)	183
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	3 cut(s)	205, 262, 1072
BcuI	ACTAGT	1 cut(s)	911
BfaI	CTAG	5 cut(s)	564, 912, 1016, 1281, 1314
BfmI	CTRYAG	2 cut(s)	524, 1157
BfuAI	ACCTGC	2 cut(s)	61, 531
BisI	GCNGC	2 cut(s)	1157, 1336
BlnI	CCTAGG	1 cut(s)	1313
BlsI	GCNGC	2 cut(s)	1158, 1337
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	1300
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	1300
BmiI	GGNNCC	1 cut(s)	1319
BmrFI	CCNGG	1 cut(s)	183
BmrI	ACTGGG	1 cut(s)	327
BmsI	GCATC	6 cut(s)	576, 670, 696, 841, 943, 1313
BmuI	ACTGGG	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	132
BplI	GAGNNNNNCTC	4 cut(s)	694, 726, 772, 804
BpmI	CTGGAG	2 cut(s)	29, 443
Bpu14I	TTCGAA	1 cut(s)	281
BsaBI	GATNNNNATC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	8 cut(s)	114, 181, 182, 540, 1088, 1170, 1313, 1336
BsaXI	ACNNNNNCTCC	2 cut(s)	1050, 1080
Bse1I	ACTGG	4 cut(s)	46, 59, 333, 674
Bse3DI	GCAATG	2 cut(s)	260, 628
Bse8I	GATNNNNATC	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	8 cut(s)	114, 181, 182, 540, 1088, 1170, 1313, 1336
BseGI	GGATG	1 cut(s)	711
BseJI	GATNNNNATC	1 cut(s)	342
BseMI	GCAATG	2 cut(s)	260, 628
BseNI	ACTGG	4 cut(s)	46, 59, 333, 674
BseRI	GAGGAG	1 cut(s)	1002
BseSI	GKGCMC	1 cut(s)	1201
BseXI	GCAGC	1 cut(s)	1143
BsgI	GTGCAG	2 cut(s)	128, 491
Bsh1236I	CGCG	3 cut(s)	27, 1149, 1338
BshFI	GGCC	1 cut(s)	1312
BsiHKAI	GWGCWC	1 cut(s)	522
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	1056
BslFI	GGGAC	1 cut(s)	706
BsmAI	GTCTC	3 cut(s)	205, 262, 1072
BsmFI	GGGAC	1 cut(s)	706
BsnI	GGCC	1 cut(s)	1312
Bso31I	GGTCTC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	522, 1201
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	5 cut(s)	78, 337, 403, 905, 1174
Bsp19I	CCATGG	2 cut(s)	114, 1170
BspACI	CCGC	4 cut(s)	148, 1147, 1336, 1338
BspANI	GGCC	1 cut(s)	1312
BspFNI	CGCG	3 cut(s)	27, 1149, 1338
BspLI	GGNNCC	1 cut(s)	1319
BspMAI	CTGCAG	2 cut(s)	528, 1161
BspMI	ACCTGC	2 cut(s)	61, 531
BspPI	GGATC	3 cut(s)	398, 900, 1182
BspQI	GCTCTTC	1 cut(s)	182
BspT104I	TTCGAA	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	205
BsrDI	GCAATG	2 cut(s)	260, 628
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	4 cut(s)	46, 59, 333, 674
BssECI	CCNNGG	8 cut(s)	114, 181, 182, 540, 1088, 1170, 1313, 1336
BssMI	GATC	5 cut(s)	78, 337, 403, 905, 1174
BssNAI	GTATAC	1 cut(s)	992
BssT1I	CCWWGG	5 cut(s)	114, 540, 1088, 1170, 1313
Bst1107I	GTATAC	1 cut(s)	992
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	4 cut(s)	256, 354, 469, 1085
Bst6I	CTCTTC	1 cut(s)	182
BstAUI	TGTACA	1 cut(s)	354
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	873
BstDEI	CTNAG	3 cut(s)	1193, 1288, 1356
BstDSI	CCRYGG	3 cut(s)	114, 1170, 1336
BstF5I	GGATG	1 cut(s)	711
BstFNI	CGCG	3 cut(s)	27, 1149, 1338
BstKTI	GATC	5 cut(s)	81, 340, 406, 908, 1177
BstMAI	GTCTC	3 cut(s)	205, 262, 1072
BstMBI	GATC	5 cut(s)	78, 337, 403, 905, 1174
BstMWI	GCNNNNNNNGC	2 cut(s)	1016, 1332
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	2 cut(s)	524, 1157
BstSLI	GKGCMC	1 cut(s)	1201
BstUI	CGCG	3 cut(s)	27, 1149, 1338
BstV1I	GCAGC	1 cut(s)	1143
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	2 cut(s)	403, 905
BstYI	RGATCY	2 cut(s)	403, 905
BstZ17I	GTATAC	1 cut(s)	992
BsuRI	GGCC	1 cut(s)	1312
BtgI	CCRYGG	3 cut(s)	114, 1170, 1336
BtsCI	GGATG	1 cut(s)	711
BtsIMutI	CAGTG	2 cut(s)	340, 474
BveI	ACCTGC	2 cut(s)	61, 531
Cac8I	GCNNGC	1 cut(s)	873
CaiI	CAGNNNCTG	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	1300
Cfr42I	CCGCGG	1 cut(s)	1339
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	4 cut(s)	115, 266, 1030, 1171
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	3 cut(s)	1193, 1288, 1356
DpnI	GATC	5 cut(s)	80, 339, 405, 907, 1176
DpnII	GATC	5 cut(s)	78, 337, 403, 905, 1174
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco130I	CCWWGG	5 cut(s)	114, 540, 1088, 1170, 1313
Eco31I	GGTCTC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	1300
Eco57I	CTGAAG	3 cut(s)	144, 962, 1115
Eco88I	CYCGRG	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	181
EcoT14I	CCWWGG	5 cut(s)	114, 540, 1088, 1170, 1313
ErhI	CCWWGG	5 cut(s)	114, 540, 1088, 1170, 1313
FaeI	CATG	4 cut(s)	118, 269, 1033, 1174
FaqI	GGGAC	1 cut(s)	706
FatI	CATG	4 cut(s)	114, 265, 1029, 1170
FauNDI	CATATG	2 cut(s)	743, 889
FbaI	TGATCA	1 cut(s)	337
FblI	GTMKAC	2 cut(s)	670, 991
Fnu4HI	GCNGC	2 cut(s)	1157, 1336
FokI	GGATG	1 cut(s)	718
Fsp4HI	GCNGC	2 cut(s)	1157, 1336
FspBI	CTAG	5 cut(s)	564, 912, 1016, 1281, 1314
GluI	GCNGC	2 cut(s)	1157, 1336
GsuI	CTGGAG	2 cut(s)	29, 443
HaeIII	GGCC	1 cut(s)	1312
HapII	CCGG	1 cut(s)	1056
HgaI	GACGC	1 cut(s)	16
Hin1II	CATG	4 cut(s)	118, 269, 1033, 1174
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HinfI	GANTC	9 cut(s)	91, 128, 560, 625, 732, 781, 947, 1037, 1162
HpaII	CCGG	1 cut(s)	1056
HphI	GGTGA	2 cut(s)	332, 860
Hpy166II	GTNNAC	5 cut(s)	365, 671, 739, 958, 992
Hpy188I	TCNGA	7 cut(s)	328, 433, 511, 585, 731, 801, 838
Hpy188III	TCNNGA	7 cut(s)	95, 169, 301, 382, 606, 751, 791
Hpy8I	GTNNAC	5 cut(s)	365, 671, 739, 958, 992
Hpy99I	CGWCG	3 cut(s)	14, 233, 239
HpyAV	CCTTC	5 cut(s)	94, 795, 893, 937, 973
HpyCH4III	ACNGT	4 cut(s)	256, 354, 469, 1085
HpyCH4IV	ACGT	2 cut(s)	197, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1016, 1332
HpyF3I	CTNAG	3 cut(s)	1193, 1288, 1356
HpySE526I	ACGT	2 cut(s)	197, 533
Hsp92II	CATG	4 cut(s)	118, 269, 1033, 1174
Ksp22I	TGATCA	1 cut(s)	337
KspI	CCGCGG	1 cut(s)	1339
Kzo9I	GATC	5 cut(s)	78, 337, 403, 905, 1174
LguI	GCTCTTC	1 cut(s)	182
LmnI	GCTCC	2 cut(s)	48, 1015
Lsp1109I	GCAGC	1 cut(s)	1143
LweI	GCATC	6 cut(s)	576, 670, 696, 841, 943, 1313
MaeI	CTAG	5 cut(s)	564, 912, 1016, 1281, 1314
MaeII	ACGT	2 cut(s)	197, 533
MaeIII	GTNAC	4 cut(s)	28, 118, 315, 1231
MalI	GATC	5 cut(s)	80, 339, 405, 907, 1176
MboI	GATC	5 cut(s)	78, 337, 403, 905, 1174
MfeI	CAATTG	2 cut(s)	154, 292
MflI	RGATCY	2 cut(s)	403, 905
MhlI	GDGCHC	2 cut(s)	522, 1201
MluI	ACGCGT	1 cut(s)	25
MlyI	GAGTC	5 cut(s)	122, 569, 726, 790, 941
MmeI	TCCRAC	3 cut(s)	188, 411, 436
MroXI	GAANNNNTTC	2 cut(s)	287, 489
MseI	TTAA	6 cut(s)	75, 411, 570, 815, 1227, 1271
MspA1I	CMGCKG	1 cut(s)	1338
MspI	CCGG	1 cut(s)	1056
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	2 cut(s)	154, 292
MvaI	CCWGG	1 cut(s)	183
MvnI	CGCG	3 cut(s)	27, 1149, 1338
MwoI	GCNNNNNNNGC	2 cut(s)	1016, 1332
NcoI	CCATGG	2 cut(s)	114, 1170
NdeI	CATATG	2 cut(s)	743, 889
NdeII	GATC	5 cut(s)	78, 337, 403, 905, 1174
NlaIII	CATG	4 cut(s)	118, 269, 1033, 1174
NlaIV	GGNNCC	1 cut(s)	1319
NmuCI	GTSAC	1 cut(s)	28
NspV	TTCGAA	1 cut(s)	281
PaqCI	CACCTGC	1 cut(s)	531
PasI	CCCWGGG	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	182
PdmI	GAANNNNTTC	2 cut(s)	287, 489
PfeI	GAWTC	4 cut(s)	91, 625, 1037, 1162
PkrI	GCNGC	2 cut(s)	1158, 1337
PleI	GAGTC	5 cut(s)	122, 568, 726, 789, 941
PpsI	GAGTC	5 cut(s)	122, 568, 726, 789, 941
PsiI	TTATAA	1 cut(s)	1076
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	1319
PspPI	GGNCC	1 cut(s)	1300
PstI	CTGCAG	2 cut(s)	528, 1161
PstNI	CAGNNNCTG	1 cut(s)	421
PsuI	RGATCY	2 cut(s)	403, 905
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SacII	CCGCGG	1 cut(s)	1339
SapI	GCTCTTC	1 cut(s)	182
SaqAI	TTAA	6 cut(s)	75, 411, 570, 815, 1227, 1271
SatI	GCNGC	2 cut(s)	1157, 1336
Sau3AI	GATC	5 cut(s)	78, 337, 403, 905, 1174
Sau96I	GGNCC	1 cut(s)	1300
SchI	GAGTC	5 cut(s)	122, 569, 726, 790, 941
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	2 cut(s)	522, 1201
SfaNI	GCATC	6 cut(s)	576, 670, 696, 841, 943, 1313
SfcI	CTRYAG	2 cut(s)	524, 1157
Sfr303I	CCGCGG	1 cut(s)	1339
SfuI	TTCGAA	1 cut(s)	281
SgrBI	CCGCGG	1 cut(s)	1339
SinI	GGWCC	1 cut(s)	1300
SpeI	ACTAGT	1 cut(s)	911
SsiI	CCGC	4 cut(s)	148, 1147, 1336, 1338
SspMI	CTAG	5 cut(s)	564, 912, 1016, 1281, 1314
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	5 cut(s)	114, 540, 1088, 1170, 1313
TaaI	ACNGT	4 cut(s)	256, 354, 469, 1085
TaiI	ACGT	2 cut(s)	200, 536
TaqI	TCGA	4 cut(s)	51, 281, 450, 1040
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	1 cut(s)	1338
TfiI	GAWTC	4 cut(s)	91, 625, 1037, 1162
Tru1I	TTAA	6 cut(s)	75, 411, 570, 815, 1227, 1271
Tru9I	TTAA	6 cut(s)	75, 411, 570, 815, 1227, 1271
TscAI	CASTG	2 cut(s)	340, 474
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	1156
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	4 cut(s)	617, 834, 983, 1018
TspGWI	ACGGA	2 cut(s)	708, 1295
TspRI	CASTG	2 cut(s)	340, 474
VpaK11BI	GGWCC	1 cut(s)	1300
XapI	RAATTY	4 cut(s)	275, 545, 1099, 1205
XmaJI	CCTAGG	1 cut(s)	1313
XmiI	GTMKAC	2 cut(s)	670, 991
XmnI	GAANNNNTTC	2 cut(s)	287, 489
XspI	CTAG	5 cut(s)	564, 912, 1016, 1281, 1314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.