Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008991.1

Orthogroup ID

OG0019013

Physical Location & Seq

Genomic Coordinates Forward (+)

16687 .. 19041

Gene Structure 2355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008991.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgaagctcgtggagaatcaacaagcaccaaacacacgtgccggttcatcctctaccaaagaagaagaacactcaccacgtggcaccactcgtggcctaaatccgatcaagatcaagcttctacagcccttggtcaatcgtcttcctcaaatcgtcaacataacgagaagttcacactacaaccgttcgattcaagatcaagtgctcgtcacccttggatcaaatcaacatttggttatggaaaccgacgaagaagaacaacgcgtcactccattccagctccagttcgacaagccagtcgcttcgcagatcgcagagtggaatcccgagaaggatttactcgccatggtaactgaagactccaagatttttactgcaccgcttcaattggcagaggctctggacaatctccccaggtctgtgcctagtattcatgtgtttaatctggttatcagcatctattcgcttactcacacatatcagtttggcagtgaacttgttgttatattcttgaagtttctatatgaccaagatcctgttaagcagttgctggaggtgtcggaagctgatgagagtatcgaagttggattggaaacggtgcagagagttagagaattagttcagtttgggggagtttcagattgtgagcacctgcagaggacgttagccaaggaatttcagcagatggagtctaggtatgcagaggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC4 ANAPC4_WD40

Protein Analysis

236

Amino Acids

26.84

Weight (kDa)

5.04

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019013)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0006431
rosa_laevigata	RLG00000031360
rosa_multiflora	Rmu_co8360215.1_g000001 Rmu_sc0008991.1_g000006 Rmu_sc0036442.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069550
rosa_rugosa	Rorug05G0252100
rosa_samantha	Rh5CG363500
rosa_wichuraiana	Rw5G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	660
AasI	GACNNNNNNGTC	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	660
AccB1I	GGYRCC	1 cut(s)	83
AccII	CGCG	1 cut(s)	264
AciI	CCGC	1 cut(s)	380
AclWI	GGATC	2 cut(s)	226, 527
AcsI	RAATTY	1 cut(s)	674
AcuI	CTGAAG	1 cut(s)	375
AcvI	CACGTG	2 cut(s)	38, 80
AdeI	CACNNNGTG	1 cut(s)	80
AflIII	ACRYGT	2 cut(s)	35, 262
AgsI	TTSAA	3 cut(s)	194, 386, 514
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	4 cut(s)	7, 118, 280, 566
AluI	AGCT	4 cut(s)	7, 118, 280, 566
Alw21I	GWGCWC	2 cut(s)	207, 651
AlwI	GGATC	2 cut(s)	226, 527
AlwNI	CAGNNNCTG	1 cut(s)	550
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	94
ApoI	RAATTY	1 cut(s)	674
Asp700I	GAANNNNTTC	1 cut(s)	618
AsuHPI	GGTGA	2 cut(s)	66, 202
AvaI	CYCGRG	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	83
BauI	CACGAG	2 cut(s)	8, 90
BbrPI	CACGTG	2 cut(s)	38, 80
BbsI	GAAGAC	2 cut(s)	134, 363
Bbv12I	GWGCWC	2 cut(s)	207, 651
BccI	CCATC	1 cut(s)	679
BciT130I	CCWGG	1 cut(s)	415
BfaI	CTAG	2 cut(s)	426, 693
BfmI	CTRYAG	2 cut(s)	122, 653
BfuAI	ACCTGC	1 cut(s)	660
Bme1390I	CCNGG	1 cut(s)	415
BmeT110I	CYCGRG	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	415
BmsI	GCATC	1 cut(s)	465
BpiI	GAAGAC	2 cut(s)	134, 363
BpmI	CTGGAG	2 cut(s)	266, 572
BsaAI	YACGTR	2 cut(s)	38, 80
BsaBI	GATNNNNATC	1 cut(s)	110
BsaJI	CCNNGG	5 cut(s)	129, 214, 345, 413, 669
BsaXI	ACNNNNNCTCC	2 cut(s)	680, 710
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	283, 296
Bse8I	GATNNNNATC	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	5 cut(s)	129, 214, 345, 413, 669
BseGI	GGATG	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	110
BseNI	ACTGG	2 cut(s)	283, 296
BsgI	GTGCAG	2 cut(s)	360, 620
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	96
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	2 cut(s)	207, 651
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	1 cut(s)	42
BsnI	GGCC	1 cut(s)	96
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	207, 651
Bsp143I	GATC	6 cut(s)	105, 111, 196, 218, 309, 532
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	1 cut(s)	380
BspANI	GGCC	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	85
BspMAI	CTGCAG	1 cut(s)	657
BspMI	ACCTGC	1 cut(s)	660
BspPI	GGATC	2 cut(s)	226, 527
BspT107I	GGYRCC	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	283, 296
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	5 cut(s)	129, 214, 345, 413, 669
BssMI	GATC	6 cut(s)	105, 111, 196, 218, 309, 532
BssSI	CACGAG	2 cut(s)	8, 90
BssT1I	CCWWGG	4 cut(s)	129, 214, 345, 669
Bst2BI	CACGAG	2 cut(s)	8, 90
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	2 cut(s)	185, 598
BstBAI	YACGTR	2 cut(s)	38, 80
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	1 cut(s)	264
BstKTI	GATC	6 cut(s)	108, 114, 199, 221, 312, 535
BstMBI	GATC	6 cut(s)	105, 111, 196, 218, 309, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNI	CCWGG	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	413
BstSFI	CTRYAG	2 cut(s)	122, 653
BstUI	CGCG	1 cut(s)	264
BstV2I	GAAGAC	2 cut(s)	134, 363
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuRI	GGCC	1 cut(s)	96
BtgI	CCRYGG	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	496
BtsIMutI	CAGTG	1 cut(s)	496
BveI	ACCTGC	1 cut(s)	660
CaiI	CAGNNNCTG	1 cut(s)	550
Cfr10I	RCCGGY	1 cut(s)	41
CseI	GACGC	1 cut(s)	253
CviAII	CATG	2 cut(s)	346, 434
CviJI	RGCY	9 cut(s)	7, 96, 118, 127, 280, 295, 398, 566, 668
CviKI_1	RGCY	9 cut(s)	7, 96, 118, 127, 280, 295, 398, 566, 668
DpnI	GATC	6 cut(s)	107, 113, 198, 220, 311, 534
DpnII	GATC	6 cut(s)	105, 111, 196, 218, 309, 532
DraIII	CACNNNGTG	1 cut(s)	80
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
Eco130I	CCWWGG	4 cut(s)	129, 214, 345, 669
Eco57I	CTGAAG	1 cut(s)	375
Eco72I	CACGTG	2 cut(s)	38, 80
Eco88I	CYCGRG	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	413
EcoT14I	CCWWGG	4 cut(s)	129, 214, 345, 669
ErhI	CCWWGG	4 cut(s)	129, 214, 345, 669
FaeI	CATG	2 cut(s)	349, 437
FaiI	YATR	9 cut(s)	161, 239, 347, 435, 478, 506, 523, 525, 699
FatI	CATG	2 cut(s)	345, 433
FokI	GGATG	1 cut(s)	34
FspBI	CTAG	2 cut(s)	426, 693
GsuI	CTGGAG	2 cut(s)	266, 572
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	1 cut(s)	42
HgaI	GACGC	1 cut(s)	253
Hin1II	CATG	2 cut(s)	349, 437
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	5 cut(s)	16, 190, 322, 359, 689
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	2 cut(s)	66, 202
Hpy166II	GTNNAC	3 cut(s)	157, 173, 494
Hpy188I	TCNGA	3 cut(s)	105, 562, 640
Hpy188III	TCNNGA	5 cut(s)	109, 194, 326, 401, 511
Hpy8I	GTNNAC	3 cut(s)	157, 173, 494
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	2 cut(s)	185, 598
HpyCH4IV	ACGT	3 cut(s)	37, 79, 662
HpyCH4V	TGCA	4 cut(s)	377, 601, 655, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpySE526I	ACGT	3 cut(s)	37, 79, 662
Hsp92II	CATG	2 cut(s)	349, 437
Kzo9I	GATC	6 cut(s)	105, 111, 196, 218, 309, 532
LmnI	GCTCC	1 cut(s)	285
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	2 cut(s)	426, 693
MaeII	ACGT	3 cut(s)	37, 79, 662
MaeIII	GTNAC	3 cut(s)	208, 265, 349
MalI	GATC	6 cut(s)	107, 113, 198, 220, 311, 534
MboI	GATC	6 cut(s)	105, 111, 196, 218, 309, 532
MboII	GAAGA	6 cut(s)	74, 77, 134, 263, 266, 368
MfeI	CAATTG	1 cut(s)	386
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	2 cut(s)	207, 651
MluCI	AATT	3 cut(s)	386, 614, 674
MluI	ACGCGT	1 cut(s)	262
MlyI	GAGTC	2 cut(s)	353, 698
MmeI	TCCRAC	2 cut(s)	540, 565
MnlI	CCTC	6 cut(s)	61, 156, 388, 547, 651, 697
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	2 cut(s)	441, 540
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	415
MunI	CAATTG	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	415
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	124
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	6 cut(s)	105, 111, 196, 218, 309, 532
NlaIII	CATG	2 cut(s)	349, 437
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	2 cut(s)	208, 265
PaqCI	CACCTGC	1 cut(s)	660
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	3 cut(s)	16, 190, 322
PleI	GAGTC	2 cut(s)	353, 697
PmaCI	CACGTG	2 cut(s)	38, 80
PmlI	CACGTG	2 cut(s)	38, 80
PpsI	GAGTC	2 cut(s)	353, 697
Ppu21I	YACGTR	2 cut(s)	38, 80
Psp6I	CCWGG	1 cut(s)	413
PspCI	CACGTG	2 cut(s)	38, 80
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	657
PstNI	CAGNNNCTG	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	532
SaqAI	TTAA	2 cut(s)	441, 540
Sau3AI	GATC	6 cut(s)	105, 111, 196, 218, 309, 532
SchI	GAGTC	2 cut(s)	353, 698
ScrFI	CCNGG	1 cut(s)	415
SduI	GDGCHC	2 cut(s)	207, 651
SfaNI	GCATC	1 cut(s)	465
SfcI	CTRYAG	2 cut(s)	122, 653
Sse9I	AATT	3 cut(s)	386, 614, 674
SsiI	CCGC	1 cut(s)	380
SspMI	CTAG	2 cut(s)	426, 693
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	4 cut(s)	129, 214, 345, 669
TaaI	ACNGT	2 cut(s)	185, 598
TaiI	ACGT	3 cut(s)	40, 82, 665
TaqI	TCGA	3 cut(s)	188, 288, 579
TasI	AATT	3 cut(s)	386, 614, 674
TfiI	GAWTC	3 cut(s)	16, 190, 322
Tru1I	TTAA	2 cut(s)	441, 540
Tru9I	TTAA	2 cut(s)	441, 540
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	2 cut(s)	208, 265
Tsp45I	GTSAC	2 cut(s)	208, 265
TspDTI	ATGAA	3 cut(s)	17, 36, 422
TspRI	CASTG	1 cut(s)	496
XapI	RAATTY	1 cut(s)	674
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	2 cut(s)	426, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.