Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014854

Physical Location & Seq

Genomic Coordinates Forward (+)

4660504 .. 4663753

Gene Structure 3250 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28846

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAAATGTTACAACATTCATTGGAAGATAGTTTTCTGAATATTTCAGTTTTCGTGCTTCTTTCCTTGGTTGTTAGATCGATTTTGAATCATGGAAGCGTTGCTCCTGCCAAGAACTCCAGACTATCACCTCTGCCTCCAGAATGTGCTGGTTTCAATTATGGTGTTGGTGAAACCATTGATATACCTGTTGATGGAAGTGGGGATTTGAAAAAGAGGGAGAGGGAACTCCAAGCTAAAGAAGCTGAACTGAGAAAGTGTGAAGAGATCCACATTGGCTTCTGCATCTTTGCTGCGGTTGCTCCCCCTATAATGTTCAAAGGAAAATCTCTCATTGGCATTCTGGCTGCAATTGATATTCGAAGTGATCATGCTTTGGTTAGGCAAGTATACATGTACGTCCCGGGAAGTGGTAAAGCTGCTAAAATGAAGCGTAAGGGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

148

Amino Acids

16.13

Weight (kDa)

8.81

Isoelectric Point (pI)

58.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014854)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0007131 RchiOBHm_Chr5g0007411
rosa_multiflora	Rmu_co8074744.1_g000001 Rmu_sc0012775.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038990 Rroxscaffold_1G00069110 Rroxscaffold_4G00322800
rosa_samantha	Rh1AG289900 Rh3CG256800 Rh4BG047200 Rh5AG054900 Rh5BG234000 Rh5DG051600 Rh5DG384400 Rh5DG564000 Rh6CG209500 Rh7AG486500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	390
AciI	CCGC	1 cut(s)	296
AclWI	GGATC	1 cut(s)	262
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	2 cut(s)	194, 410
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	4 cut(s)	88, 157, 211, 319
AluBI	AGCT	3 cut(s)	236, 245, 419
AluI	AGCT	3 cut(s)	236, 245, 419
AlwI	GGATC	1 cut(s)	262
Ama87I	CYCGRG	1 cut(s)	403
ApeKI	GCWGC	3 cut(s)	293, 347, 419
AsuC2I	CCSGG	2 cut(s)	404, 405
AsuHPI	GGTGA	2 cut(s)	120, 182
AsuII	TTCGAA	1 cut(s)	361
AvaI	CYCGRG	1 cut(s)	403
BbvI	GCAGC	3 cut(s)	280, 334, 406
BccI	CCATC	1 cut(s)	188
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	2 cut(s)	404, 405
BisI	GCNGC	3 cut(s)	294, 348, 420
BlsI	GCNGC	3 cut(s)	295, 349, 421
Bme1390I	CCNGG	2 cut(s)	404, 405
BmeT110I	CYCGRG	1 cut(s)	403
BmrFI	CCNGG	2 cut(s)	404, 405
BmsI	GCATC	1 cut(s)	294
BpmI	CTGGAG	2 cut(s)	103, 123
Bpu14I	TTCGAA	1 cut(s)	361
BpuMI	CCSGG	2 cut(s)	404, 405
Bsa29I	ATCGAT	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	66, 403
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 410
BseCI	ATCGAT	1 cut(s)	80
BseDI	CCNNGG	2 cut(s)	66, 403
BseLI	CCNNNNNNNGG	2 cut(s)	194, 410
BseMII	CTCAG	1 cut(s)	242
BseXI	GCAGC	3 cut(s)	280, 334, 406
BshVI	ATCGAT	1 cut(s)	80
BsiHKCI	CYCGRG	1 cut(s)	403
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	2 cut(s)	194, 410
BsmFI	GGGAC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	339
BsoBI	CYCGRG	1 cut(s)	403
Bsp119I	TTCGAA	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	77, 267, 367
BspACI	CCGC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	243
BspDI	ATCGAT	1 cut(s)	80
BspPI	GGATC	1 cut(s)	262
BspT104I	TTCGAA	1 cut(s)	361
BssECI	CCNNGG	2 cut(s)	66, 403
BssMI	GATC	3 cut(s)	77, 267, 367
BssNAI	GTATAC	1 cut(s)	391
BssT1I	CCWWGG	1 cut(s)	66
Bst1107I	GTATAC	1 cut(s)	391
Bst6I	CTCTTC	1 cut(s)	258
BstBI	TTCGAA	1 cut(s)	361
BstDEI	CTNAG	1 cut(s)	251
BstKTI	GATC	3 cut(s)	80, 270, 370
BstMBI	GATC	3 cut(s)	77, 267, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 299
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	2 cut(s)	402, 403
BstV1I	GCAGC	3 cut(s)	280, 334, 406
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BstZ17I	GTATAC	1 cut(s)	391
Bsu15I	ATCGAT	1 cut(s)	80
BsuTUI	ATCGAT	1 cut(s)	80
Cfr9I	CCCGGG	1 cut(s)	403
ClaI	ATCGAT	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	4 cut(s)	92, 371, 394, 444
CviJI	RGCY	5 cut(s)	236, 245, 279, 347, 419
CviKI_1	RGCY	5 cut(s)	236, 245, 279, 347, 419
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	3 cut(s)	79, 269, 369
DpnII	GATC	3 cut(s)	77, 267, 367
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	4 cut(s)	95, 374, 397, 447
FaiI	YATR	8 cut(s)	93, 162, 185, 311, 372, 391, 395, 445
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	4 cut(s)	91, 370, 393, 443
FbaI	TGATCA	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	3 cut(s)	294, 348, 420
Fsp4HI	GCNGC	3 cut(s)	294, 348, 420
GluI	GCNGC	3 cut(s)	294, 348, 420
GsuI	CTGGAG	2 cut(s)	103, 123
HapII	CCGG	1 cut(s)	404
Hin1II	CATG	4 cut(s)	95, 374, 397, 447
HinfI	GANTC	1 cut(s)	88
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	2 cut(s)	120, 182
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	2 cut(s)	120, 140
Hpy8I	GTNNAC	1 cut(s)	391
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	2 cut(s)	285, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 299
HpyF3I	CTNAG	1 cut(s)	251
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	4 cut(s)	95, 374, 397, 447
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	77, 267, 367
LmnI	GCTCC	3 cut(s)	109, 307, 440
LpnPI	CCDG	7 cut(s)	120, 133, 135, 153, 201, 329, 417
Lsp1109I	GCAGC	3 cut(s)	280, 334, 406
LweI	GCATC	1 cut(s)	294
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	3 cut(s)	79, 269, 369
MboI	GATC	3 cut(s)	77, 267, 367
MboII	GAAGA	2 cut(s)	38, 275
MfeI	CAATTG	1 cut(s)	351
MflI	RGATCY	1 cut(s)	267
MluCI	AATT	2 cut(s)	157, 351
MnlI	CCTC	4 cut(s)	141, 147, 210, 216
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	2 cut(s)	404, 405
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	242, 299
NciI	CCSGG	2 cut(s)	404, 405
NdeII	GATC	3 cut(s)	77, 267, 367
NlaIII	CATG	4 cut(s)	95, 374, 397, 447
NspI	RCATGY	1 cut(s)	397
NspV	TTCGAA	1 cut(s)	361
PciI	ACATGT	1 cut(s)	393
PctI	GAATGC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	295, 349, 421
PscI	ACATGT	1 cut(s)	393
PsuI	RGATCY	1 cut(s)	267
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SatI	GCNGC	3 cut(s)	294, 348, 420
Sau3AI	GATC	3 cut(s)	77, 267, 367
ScrFI	CCNGG	2 cut(s)	404, 405
SetI	ASST	6 cut(s)	133, 190, 238, 247, 402, 421
SfaNI	GCATC	1 cut(s)	294
SfuI	TTCGAA	1 cut(s)	361
SmaI	CCCGGG	1 cut(s)	405
Sse9I	AATT	2 cut(s)	157, 351
SsiI	CCGC	1 cut(s)	296
SspI	AATATT	1 cut(s)	43
StyD4I	CCNGG	2 cut(s)	402, 403
StyI	CCWWGG	1 cut(s)	66
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	2 cut(s)	80, 361
TasI	AATT	2 cut(s)	157, 351
TfiI	GAWTC	1 cut(s)	88
TseI	GCWGC	3 cut(s)	293, 347, 419
TspDTI	ATGAA	2 cut(s)	9, 443
TspMI	CCCGGG	1 cut(s)	403
XceI	RCATGY	1 cut(s)	397
XmaI	CCCGGG	1 cut(s)	403
XmiI	GTMKAC	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.