Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014854

Physical Location & Seq

Genomic Coordinates Reverse (-)

90117158 .. 90124184

Gene Structure 7027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00069110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGACCCGTGGCCACCACATACTTGGCAACATCATCGAACACTTCTTGAAGAAGAAGTCTTGAAACTTGAACAGGTTGAGGATCTTACAGCCATACAGCCAAGTTGTTGCTCCGAGAAGTCTCTATCTAAAACCGACATCAAGCTCCATAAAAACTGGGTCCGAGAGTGCTTTGAAGTACCGATGGTTTTTCATATTTCTGGTAATGTTGTCTCAGATTTCTTTGAAGAGGAGGAGGTCAATCTGTTCTCGAATCATGGAAGCGTTGCTCCTGCCAAGAACTCCAGACTATCACCTCTGCCTCCAGAACGTGCTGGTTTCAATTATGGTATTGGTGAAACCGTTGATATACCTATTGATGGAAGTGGGAGGGAGAGGGAACTCCAAGCTAAAGAAGCTGAACTGAGAAAGTGTGAAGAGCAAGTATACATGTACGTCCCGGGAAGTGGTAAAGCTGCTAAAATGAAGCGTAAGGGAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

160

Amino Acids

18.15

Weight (kDa)

5.55

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014854)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0007131 RchiOBHm_Chr5g0007411
rosa_multiflora	Rmu_co8074744.1_g000001 Rmu_sc0012775.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038990 Rroxscaffold_1G00069110 Rroxscaffold_4G00322800
rosa_samantha	Rh1AG289900 Rh3CG256800 Rh4BG047200 Rh5AG054900 Rh5BG234000 Rh5DG051600 Rh5DG384400 Rh5DG564000 Rh6CG209500 Rh7AG486500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	426
AclWI	GGATC	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	11
AfaI	GTAC	2 cut(s)	180, 434
AfiI	CCNNNNNNNGG	2 cut(s)	359, 446
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	6 cut(s)	50, 64, 71, 176, 227, 322
AluBI	AGCT	4 cut(s)	145, 389, 398, 455
AluI	AGCT	4 cut(s)	145, 389, 398, 455
Alw26I	GTCTC	2 cut(s)	126, 217
AlwI	GGATC	1 cut(s)	90
Ama87I	CYCGRG	1 cut(s)	439
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	455
AspS9I	GGNCC	2 cut(s)	4, 160
AsuC2I	CCSGG	2 cut(s)	440, 441
AsuHPI	GGTGA	2 cut(s)	285, 347
AvaI	CYCGRG	1 cut(s)	439
AvaII	GGWCC	2 cut(s)	4, 160
BalI	TGGCCA	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	2 cut(s)	178, 353
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BcnI	CCSGG	2 cut(s)	440, 441
BcoDI	GTCTC	2 cut(s)	126, 217
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
Bme1390I	CCNGG	2 cut(s)	440, 441
Bme18I	GGWCC	2 cut(s)	4, 160
BmeT110I	CYCGRG	1 cut(s)	439
BmgT120I	GGNCC	2 cut(s)	4, 160
BmiI	GGNNCC	3 cut(s)	6, 161, 478
BmrFI	CCNGG	2 cut(s)	440, 441
BmrI	ACTGGG	1 cut(s)	166
BmuI	ACTGGG	1 cut(s)	166
BpmI	CTGGAG	2 cut(s)	268, 288
BpuMI	CCSGG	2 cut(s)	440, 441
BsaJI	CCNNGG	2 cut(s)	8, 439
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 446
Bse1I	ACTGG	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	8, 439
BseLI	CCNNNNNNNGG	2 cut(s)	359, 446
BseMII	CTCAG	2 cut(s)	228, 395
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	2 cut(s)	245, 248
BseXI	GCAGC	1 cut(s)	442
BshFI	GGCC	1 cut(s)	13
BsiHKCI	CYCGRG	1 cut(s)	439
BsiSI	CCGG	1 cut(s)	440
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	2 cut(s)	359, 446
BsmAI	GTCTC	2 cut(s)	126, 217
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	13
BsoBI	CYCGRG	1 cut(s)	439
Bsp143I	GATC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	2 cut(s)	227, 396
BspLI	GGNNCC	3 cut(s)	6, 161, 478
BspPI	GGATC	1 cut(s)	90
BspQI	GCTCTTC	1 cut(s)	411
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	8, 439
BssMI	GATC	1 cut(s)	82
BssNAI	GTATAC	1 cut(s)	427
Bst1107I	GTATAC	1 cut(s)	427
Bst4CI	ACNGT	1 cut(s)	343
Bst6I	CTCTTC	2 cut(s)	222, 411
BstDEI	CTNAG	2 cut(s)	214, 404
BstDSI	CCRYGG	1 cut(s)	8
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	2 cut(s)	126, 217
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	2 cut(s)	438, 439
BstV1I	GCAGC	1 cut(s)	442
BstX2I	RGATCY	1 cut(s)	82
BstXI	CCANNNNNNTGG	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	82
BstZ17I	GTATAC	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	13
BtgI	CCRYGG	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	4, 160
Cfr9I	CCCGGG	1 cut(s)	439
Csp6I	GTAC	2 cut(s)	179, 433
CviAII	CATG	2 cut(s)	257, 430
CviJI	RGCY	8 cut(s)	13, 92, 100, 145, 389, 398, 455, 479
CviKI_1	RGCY	8 cut(s)	13, 92, 100, 145, 389, 398, 455, 479
CviQI	GTAC	2 cut(s)	179, 433
DdeI	CTNAG	2 cut(s)	214, 404
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	11
Eam1104I	CTCTTC	2 cut(s)	222, 411
EarI	CTCTTC	2 cut(s)	222, 411
Eco47I	GGWCC	2 cut(s)	4, 160
Eco88I	CYCGRG	1 cut(s)	439
FaeI	CATG	2 cut(s)	260, 433
FaiI	YATR	9 cut(s)	21, 95, 150, 195, 258, 327, 350, 427, 431
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	2 cut(s)	256, 429
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	1 cut(s)	456
Fsp4HI	GCNGC	1 cut(s)	456
GluI	GCNGC	1 cut(s)	456
GsuI	CTGGAG	2 cut(s)	268, 288
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	1 cut(s)	440
Hin1II	CATG	2 cut(s)	260, 433
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	2 cut(s)	285, 347
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	3 cut(s)	115, 164, 217
Hpy188III	TCNNGA	5 cut(s)	47, 61, 250, 285, 305
Hpy8I	GTNNAC	1 cut(s)	427
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4IV	ACGT	2 cut(s)	310, 435
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	2 cut(s)	214, 404
HpySE526I	ACGT	2 cut(s)	310, 435
Hsp92II	CATG	2 cut(s)	260, 433
Kzo9I	GATC	1 cut(s)	82
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	4 cut(s)	116, 150, 274, 476
LpnPI	CCDG	8 cut(s)	59, 142, 186, 285, 298, 300, 318, 453
Lsp1109I	GCAGC	1 cut(s)	442
MaeII	ACGT	2 cut(s)	310, 435
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	4 cut(s)	62, 65, 239, 428
MflI	RGATCY	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	13
MluCI	AATT	1 cut(s)	322
MluNI	TGGCCA	1 cut(s)	13
MnlI	CCTC	8 cut(s)	73, 223, 226, 229, 306, 312, 363, 369
Mox20I	TGGCCA	1 cut(s)	13
MscI	TGGCCA	1 cut(s)	13
Msp20I	TGGCCA	1 cut(s)	13
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	2 cut(s)	440, 441
MwoI	GCNNNNNNNGC	1 cut(s)	395
NciI	CCSGG	2 cut(s)	440, 441
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	2 cut(s)	260, 433
NlaIV	GGNNCC	3 cut(s)	6, 161, 478
NspI	RCATGY	1 cut(s)	433
PciI	ACATGT	1 cut(s)	429
PciSI	GCTCTTC	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	457
PscI	ACATGT	1 cut(s)	429
PspN4I	GGNNCC	3 cut(s)	6, 161, 478
PspPI	GGNCC	2 cut(s)	4, 160
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	2 cut(s)	180, 434
RsaNI	GTAC	2 cut(s)	179, 433
SapI	GCTCTTC	1 cut(s)	411
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	2 cut(s)	4, 160
ScrFI	CCNGG	2 cut(s)	440, 441
SinI	GGWCC	2 cut(s)	4, 160
SmaI	CCCGGG	1 cut(s)	441
Sse9I	AATT	1 cut(s)	322
StyD4I	CCNGG	2 cut(s)	438, 439
TaaI	ACNGT	1 cut(s)	343
TaiI	ACGT	2 cut(s)	313, 438
TaqI	TCGA	2 cut(s)	37, 251
TasI	AATT	1 cut(s)	322
TfiI	GAWTC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	455
TspDTI	ATGAA	2 cut(s)	182, 479
TspMI	CCCGGG	1 cut(s)	439
VpaK11BI	GGWCC	2 cut(s)	4, 160
XceI	RCATGY	1 cut(s)	433
XcmI	CCANNNNNNNNNTGG	1 cut(s)	21
XmaI	CCCGGG	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.