Rh5DG564000

Secretory carrier-associated membrane protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
86891751 .. 86892671
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG564000.1

Sequence Viewer

Length: 291 bp
ATGGACTGTGAAAATCATGGAAGTGTTGCTCCTGCCAAGAACTCCAGACTATCACTTCTGCCTCCAGAACGTGCTGGTTTCAATTATGGTATTGGTGAAACCGTTGATATACCTATTGATGGAAGTGGGGATTTGAAAAAGAGGGAGAGGGAACTCCAAGCTAAAGAAGCTGAACTGAGAAAGTGTGAAGAGATTGTAAAACGGAAAGAGGATGCTGCAGCACGAGGTATTATGCCTTGCCTTTATTTTGCTGAAATATCAGTAGTCTTCTCATTGTTTGGGGTTAAATGA

Protein Analysis

96

Amino Acids

10.61

Weight (kDa)

5.86

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 2 cut(s) 82, 136
AluBI AGCT 2 cut(s) 161, 170
AluI AGCT 2 cut(s) 161, 170
ApeKI GCWGC 2 cut(s) 215, 218
AsuHPI GGTGA 1 cut(s) 107
BauI CACGAG 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 202, 230
BccI CCATC 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 2 cut(s) 216, 219
BlsI GCNGC 2 cut(s) 217, 220
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 259
BpmI CTGGAG 2 cut(s) 28, 48
Bsc4I CCNNNNNNNGG 1 cut(s) 119
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 167
BseXI GCAGC 2 cut(s) 202, 230
BslI CCNNNNNNNGG 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 168
BspMAI CTGCAG 1 cut(s) 220
BssSI CACGAG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 222
Bst4CI ACNGT 2 cut(s) 8, 103
Bst6I CTCTTC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 2 cut(s) 202, 230
BstV2I GAAGAC 1 cut(s) 259
BtsCI GGATG 1 cut(s) 217
CviAII CATG 1 cut(s) 17
CviJI RGCY 2 cut(s) 161, 170
CviKI_1 RGCY 2 cut(s) 161, 170
DdeI CTNAG 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
FaeI CATG 1 cut(s) 20
FaiI YATR 4 cut(s) 18, 87, 110, 233
FatI CATG 1 cut(s) 16
Fnu4HI GCNGC 2 cut(s) 216, 219
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 2 cut(s) 216, 219
GluI GCNGC 2 cut(s) 216, 219
GsuI CTGGAG 2 cut(s) 28, 48
Hin1II CATG 1 cut(s) 20
HphI GGTGA 1 cut(s) 107
Hpy188III TCNNGA 2 cut(s) 45, 65
HpyCH4III ACNGT 2 cut(s) 8, 103
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 1 cut(s) 176
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 1 cut(s) 20
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 4 cut(s) 45, 58, 60, 78
Lsp1109I GCAGC 2 cut(s) 202, 230
LweI GCATC 1 cut(s) 202
MaeII ACGT 1 cut(s) 70
MboII GAAGA 2 cut(s) 200, 259
MluCI AATT 1 cut(s) 82
MnlI CCTC 5 cut(s) 72, 135, 141, 202, 218
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 167
NlaIII CATG 1 cut(s) 20
PkrI GCNGC 2 cut(s) 217, 220
PstI CTGCAG 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 2 cut(s) 216, 219
SetI ASST 5 cut(s) 73, 115, 163, 172, 229
SfaNI GCATC 1 cut(s) 202
SfcI CTRYAG 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 21
Sse9I AATT 1 cut(s) 82
TaaI ACNGT 2 cut(s) 8, 103
TaiI ACGT 1 cut(s) 73
TasI AATT 1 cut(s) 82
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseI GCWGC 2 cut(s) 215, 218
TspGWI ACGGA 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.