DDB1- and CUL4-associated factor
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0008271 RchiOBHm_Chr5g0008341 |
| rosa_laevigata | RLG00000031557 RLG00000031562 |
| rosa_roxburghii | Rroxscaffold_1G00066830 Rroxscaffold_1G00067530 Rroxscaffold_1G00068190 |
| rosa_samantha | Rh5BG059700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 425 |
| AccI | GTMKAC | 1 cut(s) | 383 |
| AciI | CCGC | 1 cut(s) | 405 |
| AclWI | GGATC | 1 cut(s) | 361 |
| AcoI | YGGCCR | 1 cut(s) | 147 |
| AcsI | RAATTY | 1 cut(s) | 197 |
| AfaI | GTAC | 6 cut(s) | 5, 21, 103, 122, 275, 363 |
| AluBI | AGCT | 1 cut(s) | 464 |
| AluI | AGCT | 1 cut(s) | 464 |
| AlwI | GGATC | 1 cut(s) | 361 |
| AoxI | GGCC | 1 cut(s) | 147 |
| ApoI | RAATTY | 1 cut(s) | 197 |
| AsuHPI | GGTGA | 1 cut(s) | 76 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 353, 386 |
| BauI | CACGAG | 1 cut(s) | 377 |
| BccI | CCATC | 1 cut(s) | 83 |
| BceAI | ACGGC | 1 cut(s) | 134 |
| BfaI | CTAG | 1 cut(s) | 234 |
| BfmI | CTRYAG | 1 cut(s) | 45 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 155 |
| BmcAI | AGTACT | 1 cut(s) | 275 |
| BmsI | GCATC | 1 cut(s) | 424 |
| BsaBI | GATNNNNATC | 1 cut(s) | 288 |
| BsaJI | CCNNGG | 1 cut(s) | 326 |
| Bse1I | ACTGG | 1 cut(s) | 264 |
| Bse8I | GATNNNNATC | 1 cut(s) | 288 |
| BseDI | CCNNGG | 1 cut(s) | 326 |
| BseGI | GGATG | 3 cut(s) | 94, 123, 389 |
| BseJI | GATNNNNATC | 1 cut(s) | 288 |
| BseNI | ACTGG | 1 cut(s) | 264 |
| BseYI | CCCAGC | 1 cut(s) | 158 |
| BshFI | GGCC | 1 cut(s) | 149 |
| BsnI | GGCC | 1 cut(s) | 149 |
| Bsp143I | GATC | 3 cut(s) | 214, 283, 353 |
| BspACI | CCGC | 1 cut(s) | 405 |
| BspANI | GGCC | 1 cut(s) | 149 |
| BspPI | GGATC | 1 cut(s) | 361 |
| BsrI | ACTGG | 1 cut(s) | 264 |
| BssECI | CCNNGG | 1 cut(s) | 326 |
| BssMI | GATC | 3 cut(s) | 214, 283, 353 |
| BssSI | CACGAG | 1 cut(s) | 377 |
| BssT1I | CCWWGG | 1 cut(s) | 326 |
| Bst2BI | CACGAG | 1 cut(s) | 377 |
| Bst4CI | ACNGT | 2 cut(s) | 56, 210 |
| BstF5I | GGATG | 3 cut(s) | 94, 123, 389 |
| BstKTI | GATC | 3 cut(s) | 217, 286, 356 |
| BstMBI | GATC | 3 cut(s) | 214, 283, 353 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 155 |
| BstSFI | CTRYAG | 1 cut(s) | 45 |
| BsuRI | GGCC | 1 cut(s) | 149 |
| BtgZI | GCGATG | 1 cut(s) | 207 |
| BtsCI | GGATG | 3 cut(s) | 94, 123, 389 |
| BtsIMutI | CAGTG | 1 cut(s) | 61 |
| Csp6I | GTAC | 6 cut(s) | 4, 20, 102, 121, 274, 362 |
| CviAII | CATG | 3 cut(s) | 8, 298, 308 |
| CviJI | RGCY | 4 cut(s) | 149, 158, 241, 464 |
| CviKI_1 | RGCY | 4 cut(s) | 149, 158, 241, 464 |
| CviQI | GTAC | 6 cut(s) | 4, 20, 102, 121, 274, 362 |
| DpnI | GATC | 3 cut(s) | 216, 285, 355 |
| DpnII | GATC | 3 cut(s) | 214, 283, 353 |
| EaeI | YGGCCR | 1 cut(s) | 147 |
| Eco130I | CCWWGG | 1 cut(s) | 326 |
| EcoT14I | CCWWGG | 1 cut(s) | 326 |
| EcoT22I | ATGCAT | 2 cut(s) | 13, 417 |
| ErhI | CCWWGG | 1 cut(s) | 326 |
| FaeI | CATG | 3 cut(s) | 11, 301, 311 |
| FatI | CATG | 3 cut(s) | 7, 297, 307 |
| FauI | CCCGC | 1 cut(s) | 398 |
| FblI | GTMKAC | 1 cut(s) | 383 |
| FokI | GGATG | 3 cut(s) | 101, 130, 376 |
| FspBI | CTAG | 1 cut(s) | 234 |
| GsaI | CCCAGC | 1 cut(s) | 162 |
| HaeIII | GGCC | 1 cut(s) | 149 |
| Hin1II | CATG | 3 cut(s) | 11, 301, 311 |
| HinfI | GANTC | 2 cut(s) | 163, 331 |
| HphI | GGTGA | 1 cut(s) | 76 |
| Hpy166II | GTNNAC | 2 cut(s) | 384, 441 |
| Hpy188I | TCNGA | 2 cut(s) | 358, 394 |
| Hpy188III | TCNNGA | 1 cut(s) | 255 |
| Hpy8I | GTNNAC | 2 cut(s) | 384, 441 |
| Hpy99I | CGWCG | 1 cut(s) | 155 |
| HpyAV | CCTTC | 1 cut(s) | 231 |
| HpyCH4III | ACNGT | 2 cut(s) | 56, 210 |
| HpyCH4V | TGCA | 5 cut(s) | 11, 141, 307, 348, 415 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 155 |
| Hsp92II | CATG | 3 cut(s) | 11, 301, 311 |
| Kzo9I | GATC | 3 cut(s) | 214, 283, 353 |
| LmnI | GCTCC | 1 cut(s) | 257 |
| LpnPI | CCDG | 6 cut(s) | 131, 144, 196, 245, 336, 449 |
| LweI | GCATC | 1 cut(s) | 424 |
| MaeI | CTAG | 1 cut(s) | 234 |
| MalI | GATC | 3 cut(s) | 216, 285, 355 |
| MboI | GATC | 3 cut(s) | 214, 283, 353 |
| MfeI | CAATTG | 1 cut(s) | 226 |
| MluCI | AATT | 4 cut(s) | 197, 226, 337, 397 |
| MnlI | CCTC | 6 cut(s) | 60, 70, 79, 148, 260, 352 |
| Mph1103I | ATGCAT | 2 cut(s) | 13, 417 |
| MslI | CAYNNNNRTG | 1 cut(s) | 129 |
| MspA1I | CMGCKG | 1 cut(s) | 405 |
| MunI | CAATTG | 1 cut(s) | 226 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 155 |
| NdeII | GATC | 3 cut(s) | 214, 283, 353 |
| NlaIII | CATG | 3 cut(s) | 11, 301, 311 |
| NsiI | ATGCAT | 2 cut(s) | 13, 417 |
| PfeI | GAWTC | 2 cut(s) | 163, 331 |
| PsiI | TTATAA | 1 cut(s) | 425 |
| PspFI | CCCAGC | 1 cut(s) | 158 |
| RsaI | GTAC | 6 cut(s) | 5, 21, 103, 122, 275, 363 |
| RsaNI | GTAC | 6 cut(s) | 4, 20, 102, 121, 274, 362 |
| RseI | CAYNNNNRTG | 1 cut(s) | 129 |
| Sau3AI | GATC | 3 cut(s) | 214, 283, 353 |
| ScaI | AGTACT | 1 cut(s) | 275 |
| SetI | ASST | 7 cut(s) | 66, 71, 81, 185, 363, 438, 466 |
| SfaNI | GCATC | 1 cut(s) | 424 |
| SfcI | CTRYAG | 1 cut(s) | 45 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 129 |
| Sse9I | AATT | 4 cut(s) | 197, 226, 337, 397 |
| SsiI | CCGC | 1 cut(s) | 405 |
| SspMI | CTAG | 1 cut(s) | 234 |
| StyI | CCWWGG | 1 cut(s) | 326 |
| TaaI | ACNGT | 2 cut(s) | 56, 210 |
| TaqI | TCGA | 1 cut(s) | 153 |
| TasI | AATT | 4 cut(s) | 197, 226, 337, 397 |
| TatI | WGTACW | 1 cut(s) | 273 |
| TfiI | GAWTC | 2 cut(s) | 163, 331 |
| TscAI | CASTG | 1 cut(s) | 61 |
| TspDTI | ATGAA | 2 cut(s) | 210, 446 |
| TspRI | CASTG | 1 cut(s) | 61 |
| XapI | RAATTY | 1 cut(s) | 197 |
| XmiI | GTMKAC | 1 cut(s) | 383 |
| XspI | CTAG | 1 cut(s) | 234 |
| ZrmI | AGTACT | 1 cut(s) | 275 |
| Zsp2I | ATGCAT | 2 cut(s) | 13, 417 |